Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20443
         (533 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    29   0.019
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    29   0.019
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    22   3.0  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   5.2  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   6.8  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   6.8  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       21   6.8  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   9.0  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   9.0  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 29.5 bits (63), Expect = 0.019
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
 Frame = +3

Query: 324 HRDGRHGRQEERLHHRCHKQTGHHRPGHPAS---RPSGPPHLHPAADEKSRE 470
           H  G H +++   HH+ H Q  H   G          GPPH  P   ++  +
Sbjct: 165 HHMGHHMQEQHPQHHQPHHQQQHMMYGGQQGANMHQQGPPHQQPPIQQQPNQ 216


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 29.5 bits (63), Expect = 0.019
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
 Frame = +3

Query: 324 HRDGRHGRQEERLHHRCHKQTGHHRPGHPAS---RPSGPPHLHPAADEKSRE 470
           H  G H +++   HH+ H Q  H   G          GPPH  P   ++  +
Sbjct: 167 HHMGHHMQEQHPQHHQPHHQQQHMMYGGQQGANMHQQGPPHQQPPIQQQPNQ 218


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 408 DGRVDDVRSVCGTDDEDVL 352
           D  +DD +  CG D  D+L
Sbjct: 414 DLSLDDFKGTCGRDKYDIL 432


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -3

Query: 168 PNHMVSSSGPFTDI 127
           P++ +SSSGPF+ I
Sbjct: 78  PSNGLSSSGPFSSI 91


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -1

Query: 110 RWRWPLPAKFYHNQEVRRREHRAKAACRTSGICRS 6
           R +W    K  + + VRR+ + A     T G  R+
Sbjct: 285 RMKWKKDNKLPNTKNVRRKTNPAGVTTTTKGKVRA 319


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -1

Query: 110 RWRWPLPAKFYHNQEVRRREHRAKAACRTSGICRS 6
           R +W    K  + + VRR+ + A     T G  R+
Sbjct: 285 RMKWKKDNKLPNTKNVRRKTNPAGVTTTTKGKVRA 319


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 402 GHPASRPSGPPHLHPAADE 458
           G+PAS    P H +P +D+
Sbjct: 23  GYPASVQPLPRHFNPPSDK 41


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 97  LCQQSFTTTRRSVEENTARRLHAEL 23
           + +  F    R +EE+ ++  HAEL
Sbjct: 184 IIRNRFVILNRYIEESISKYKHAEL 208


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 480 AGWPRGTSRRQR 445
           AG+P G  R+QR
Sbjct: 59  AGYPAGNQRKQR 70


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,301
Number of Sequences: 336
Number of extensions: 2641
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12992348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)