Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20443
         (533 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    26   0.21 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.6  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   3.4  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   7.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   7.9  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   7.9  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   7.9  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 26.2 bits (55), Expect = 0.21
 Identities = 19/60 (31%), Positives = 21/60 (35%), Gaps = 12/60 (20%)
 Frame = +3

Query: 315 PDPHRDGR-HGRQEERL---HHRCHKQTGHHRPGHPASRPSGP--------PHLHPAADE 458
           P PH     HG         HH  H  T HH+   P +  S P        PH HP   E
Sbjct: 412 PGPHHHTMGHGHSHIHATPHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHHHPHPPE 471


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = +3

Query: 339 HGRQEERLHHRCHKQTG-HHRPGHPASRP-SGPPHLH 443
           H  Q     +  H+ +  HH+ G+    P  GPPH H
Sbjct: 317 HPHQHHPSQYHPHRGSSPHHQHGNHTMGPTMGPPHHH 353


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -1

Query: 317 WLMTRSA-APPASDTEPPRDFAWSPARRRTTR 225
           W M+  A +PP   T P R  +    RRRT R
Sbjct: 385 WQMSCVACSPPPRQTPPSRKESGRRRRRRTPR 416


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 351 EERLHHRCHKQTGHHRP 401
           E ++HH+ H Q  H +P
Sbjct: 165 ESQMHHQMHTQHPHMQP 181


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +3

Query: 375 HKQTGHHRPGHPASRPSGPP 434
           H+Q  HH+  HP ++    P
Sbjct: 811 HQQLHHHQSTHPQAQAQAQP 830


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 7/29 (24%), Positives = 11/29 (37%)
 Frame = +3

Query: 309 HQPDPHRDGRHGRQEERLHHRCHKQTGHH 395
           H    H   RH  + +  ++  H    HH
Sbjct: 424 HYNHNHNQARHSSKSDNQNNNQHNDQAHH 452


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -1

Query: 392 MSGLFVAPMMKTFFLAPMPSISV 324
           +SG+ ++PM    + +P+ S S+
Sbjct: 253 ISGMALSPMTNNLYYSPVASTSL 275


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 51  FSSTDLLVVVKLCW 92
           F++T LLVV ++C+
Sbjct: 152 FAATSLLVVAEVCY 165


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -1

Query: 392 MSGLFVAPMMKTFFLAPMPSISV 324
           +SG+ ++PM    + +P+ S S+
Sbjct: 253 ISGMALSPMTNNLYYSPVASTSL 275


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -1

Query: 392 MSGLFVAPMMKTFFLAPMPSISV 324
           +SG+ ++PM    + +P+ S S+
Sbjct: 253 ISGMALSPMTNNLYYSPVASTSL 275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,310
Number of Sequences: 438
Number of extensions: 3140
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)