Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20443
(533 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 163 5e-41
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 163 5e-41
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 163 7e-41
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 124 4e-29
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 109 1e-24
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 105 2e-23
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 99 2e-21
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 98 4e-21
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 96 1e-20
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 95 2e-20
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 92 2e-19
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 92 2e-19
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 92 2e-19
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 91 3e-19
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 91 4e-19
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 89 1e-18
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 89 1e-18
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 89 1e-18
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 88 3e-18
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 87 7e-18
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 87 7e-18
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 87 7e-18
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 87 9e-18
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 87 9e-18
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 86 1e-17
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 86 1e-17
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 86 1e-17
At4g23940.1 68417.m03443 FtsH protease, putative contains simila... 86 2e-17
At2g45500.1 68415.m05659 AAA-type ATPase family protein similar ... 85 2e-17
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 85 4e-17
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 83 9e-17
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 83 1e-16
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 83 1e-16
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 83 1e-16
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 83 1e-16
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 83 1e-16
At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 83 1e-16
At3g02450.1 68416.m00232 cell division protein ftsH, putative si... 83 1e-16
At2g34560.2 68415.m04246 katanin, putative similar to katanin p6... 83 1e-16
At2g34560.1 68415.m04245 katanin, putative similar to katanin p6... 83 1e-16
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ... 81 5e-16
At2g26140.1 68415.m03137 FtsH protease, putative contains simila... 81 5e-16
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 81 6e-16
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 81 6e-16
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond... 80 8e-16
At3g27120.1 68416.m03393 spastin ATPase, putative similar to SWI... 78 4e-15
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 77 6e-15
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-... 77 7e-15
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-... 73 9e-14
At3g16290.1 68416.m02056 FtsH protease, putative contains simila... 73 9e-14
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 73 1e-13
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 70 1e-12
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 67 6e-12
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 62 2e-10
At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ... 62 3e-10
At1g79560.1 68414.m09275 FtsH protease, putative contains simila... 56 1e-08
At4g04180.1 68417.m00593 AAA-type ATPase family protein contains... 55 3e-08
At2g18330.1 68415.m02136 AAA-type ATPase family protein contains... 52 3e-07
At4g36580.1 68417.m05193 AAA-type ATPase family protein contains... 51 6e-07
At5g16930.1 68418.m01984 AAA-type ATPase family protein contains... 48 4e-06
At3g03060.1 68416.m00302 AAA-type ATPase family protein contains... 46 2e-05
At4g24710.1 68417.m03536 AAA-type ATPase family protein similar ... 44 8e-05
At5g17730.1 68418.m02079 AAA-type ATPase family protein contains... 39 0.002
At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1, ... 38 0.004
At5g17760.1 68418.m02082 AAA-type ATPase family protein contains... 37 0.007
At4g05380.1 68417.m00820 AAA-type ATPase family protein contains... 37 0.007
At3g28610.1 68416.m03571 AAA-type ATPase family protein contains... 37 0.007
At2g37280.1 68415.m04573 ABC transporter family protein similar ... 37 0.007
At1g43910.1 68414.m05066 AAA-type ATPase family protein contains... 37 0.010
At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1 nuc... 36 0.013
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains... 36 0.013
At5g40010.1 68418.m04852 AAA-type ATPase family protein contains... 36 0.017
At3g28580.1 68416.m03568 AAA-type ATPase family protein contains... 36 0.017
At3g50930.1 68416.m05576 AAA-type ATPase family protein contains... 36 0.022
At3g28570.1 68416.m03567 AAA-type ATPase family protein contains... 36 0.022
At3g28540.1 68416.m03564 AAA-type ATPase family protein contains... 36 0.022
At4g30250.1 68417.m04301 AAA-type ATPase family protein contains... 35 0.030
At4g14670.1 68417.m02255 heat shock protein 101, putative / HSP1... 35 0.030
At3g53480.1 68416.m05904 ABC transporter family protein PDR5-lik... 35 0.030
At3g50940.1 68416.m05577 AAA-type ATPase family protein contains... 35 0.030
At5g17760.2 68418.m02083 AAA-type ATPase family protein contains... 35 0.039
At4g15230.1 68417.m02333 ABC transporter family protein similar ... 35 0.039
At5g57480.1 68418.m07183 AAA-type ATPase family protein contains... 34 0.052
At5g17750.1 68418.m02081 AAA-type ATPase family protein contains... 34 0.052
At4g15215.1 68417.m02332 ABC transporter family protein similar ... 34 0.052
At3g28520.1 68416.m03562 AAA-type ATPase family protein contains... 34 0.052
At2g18193.1 68415.m02117 AAA-type ATPase family protein contains... 34 0.052
At2g18190.1 68415.m02116 AAA-type ATPase family protein contains... 34 0.052
At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding ... 34 0.069
At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identic... 34 0.069
At1g21690.2 68414.m02715 replication factor C 37 kDa, putative S... 34 0.069
At1g21690.1 68414.m02714 replication factor C 37 kDa, putative S... 34 0.069
At4g25835.1 68417.m03716 AAA-type ATPase family protein contains... 33 0.091
At3g28600.1 68416.m03570 AAA-type ATPase family protein contains... 33 0.091
At4g15236.1 68417.m02335 ABC transporter family protein similar ... 33 0.12
At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger) fa... 33 0.12
At1g06720.1 68414.m00714 expressed protein contains Pfam domain,... 33 0.12
At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding ... 33 0.16
At1g24290.1 68414.m03065 AAA-type ATPase family protein similar ... 33 0.16
At5g67630.1 68418.m08527 DNA helicase, putative similar to RuvB-... 32 0.21
At2g46620.1 68415.m05815 AAA-type ATPase family protein contains... 32 0.28
At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding ... 32 0.28
At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding ... 31 0.37
At4g05340.1 68417.m00816 hypothetical protein 31 0.48
At3g44630.3 68416.m04798 disease resistance protein RPP1-WsB-lik... 31 0.48
At3g44630.2 68416.m04800 disease resistance protein RPP1-WsB-lik... 31 0.48
At3g44630.1 68416.m04799 disease resistance protein RPP1-WsB-lik... 31 0.48
At3g44480.1 68416.m04781 disease resistance protein (TIR-NBS-LRR... 31 0.48
At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 31 0.48
At2g36380.1 68415.m04464 ABC transporter family protein related ... 31 0.48
At1g66950.1 68414.m07612 ABC transporter family protein similar ... 31 0.48
At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR... 31 0.64
At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR... 31 0.64
At4g15233.1 68417.m02334 ABC transporter family protein similar ... 31 0.64
At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding ... 30 0.84
At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP1... 30 0.84
At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR... 30 0.84
At2g26910.1 68415.m03228 ABC transporter family protein similar ... 30 0.84
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 30 0.84
At5g45200.1 68418.m05548 disease resistance protein (TIR-NBS-LRR... 30 1.1
At5g40910.1 68418.m04967 disease resistance protein (TIR-NBS-LRR... 30 1.1
At5g17890.1 68418.m02098 LIM domain-containing protein / disease... 30 1.1
At3g16340.1 68416.m02066 ABC transporter family protein similar ... 30 1.1
At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP1... 30 1.1
At1g15210.1 68414.m01818 ABC transporter family protein Similar ... 30 1.1
At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding ... 29 1.5
At5g47040.1 68418.m05797 Lon protease homolog 1, mitochondrial (... 29 1.5
At5g27950.1 68418.m03366 kinesin motor protein-related kinesin h... 29 1.5
At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR... 29 1.5
At5g63400.1 68418.m07958 adenylate kinase identical to adenylate... 29 1.9
At5g18360.1 68418.m02160 disease resistance protein (TIR-NBS-LRR... 29 1.9
At4g13750.1 68417.m02134 expressed protein 29 1.9
At3g25510.1 68416.m03172 disease resistance protein (TIR-NBS-LRR... 29 1.9
At2g29940.1 68415.m03642 ABC transporter family protein similar ... 29 1.9
At5g45050.2 68418.m05524 disease resistance protein-related simi... 29 2.6
At5g45050.1 68418.m05523 disease resistance protein-related simi... 29 2.6
At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR... 29 2.6
At5g22330.1 68418.m02605 TATA box-binding protein-interacting pr... 29 2.6
At4g26090.1 68417.m03756 disease resistance protein RPS2 (CC-NBS... 29 2.6
At4g24610.1 68417.m03525 expressed protein 29 2.6
At3g63100.1 68416.m07087 glycine-rich protein 29 2.6
At2g14080.1 68415.m01566 disease resistance protein (TIR-NBS-LRR... 29 2.6
At1g01370.1 68414.m00052 centromeric histone H3 HTR12 (HTR12) si... 29 2.6
At5g64840.1 68418.m08157 ABC transporter family protein 28 3.4
At5g45260.1 68418.m05555 disease resistance protein (TIR-NBS-LRR... 28 3.4
At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR... 28 3.4
At1g59870.1 68414.m06745 ABC transporter family protein similar ... 28 3.4
At1g27180.1 68414.m03311 disease resistance protein (TIR-NBS-LRR... 28 3.4
At1g27170.1 68414.m03310 disease resistance protein (TIR-NBS-LRR... 28 3.4
At1g15520.1 68414.m01867 ABC transporter family protein similar ... 28 3.4
At5g66910.1 68418.m08434 disease resistance protein (CC-NBS-LRR ... 28 4.5
At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR... 28 4.5
At5g50370.1 68418.m06238 adenylate kinase, putative similar to a... 28 4.5
At3g54220.1 68416.m05993 scarecrow transcription factor, putativ... 28 4.5
At2g38770.1 68415.m04760 expressed protein 28 4.5
At1g77470.1 68414.m09021 replication factor C 36 kDA, putative s... 28 4.5
At1g73170.1 68414.m08466 expressed protein 28 4.5
At1g18150.2 68414.m02253 mitogen-activated protein kinase, putat... 28 4.5
At1g18150.1 68414.m02252 mitogen-activated protein kinase, putat... 28 4.5
At4g19500.1 68417.m02868 disease resistance protein (TIR-NBS-LRR... 27 5.9
At4g16490.1 68417.m02496 armadillo/beta-catenin repeat family pr... 27 5.9
At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR... 27 5.9
At3g54920.1 68416.m06086 pectate lyase, putative / powdery milde... 27 5.9
At3g05780.1 68416.m00649 Lon protease, putative similar to Lon p... 27 5.9
At1g26170.1 68414.m03194 importin beta-2 subunit family protein ... 27 5.9
At5g41550.1 68418.m05049 disease resistance protein (TIR-NBS-LRR... 27 7.9
At5g32775.1 68418.m03902 hypothetical protein 27 7.9
At5g32590.1 68418.m03867 myosin heavy chain-related similar to M... 27 7.9
At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial a... 27 7.9
At5g09930.1 68418.m01148 ABC transporter family protein 27 7.9
At3g51560.1 68416.m05646 disease resistance protein (TIR-NBS-LRR... 27 7.9
At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam pr... 27 7.9
At3g04210.1 68416.m00445 disease resistance protein (TIR-NBS cla... 27 7.9
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 27 7.9
At1g53390.1 68414.m06052 ABC transporter family protein similar ... 27 7.9
At1g04730.1 68414.m00469 AAA-type ATPase family protein contains... 27 7.9
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 163 bits (397), Expect = 5e-41
Identities = 73/81 (90%), Positives = 78/81 (96%)
Frame = +2
Query: 11 DKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVR 190
+KF KFGM PS+GVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVR
Sbjct: 504 EKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVR 563
Query: 191 DIFDKARSASPCVLFFDELDS 253
+IFDKAR ++PCVLFFDELDS
Sbjct: 564 EIFDKARQSAPCVLFFDELDS 584
Score = 93.5 bits (222), Expect = 8e-20
Identities = 38/79 (48%), Positives = 57/79 (72%)
Frame = +2
Query: 17 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDI 196
F G++P +G+L YGPPG GKTL+A+A+ANE A F + GPE+++ GESE+N+R
Sbjct: 233 FKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKA 292
Query: 197 FDKARSASPCVLFFDELDS 253
F++A +P ++F DE+DS
Sbjct: 293 FEEAEKNAPSIIFIDEIDS 311
Score = 92.3 bits (219), Expect = 2e-19
Identities = 42/49 (85%), Positives = 45/49 (91%)
Frame = +1
Query: 307 VINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLP 453
V+NQ+LTEMDGM AKK VFIIGATNRPDIID A+LRPGRLD LIYIPLP
Sbjct: 603 VLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLP 651
Score = 55.2 bits (127), Expect = 3e-08
Identities = 24/49 (48%), Positives = 37/49 (75%)
Frame = +1
Query: 307 VINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLP 453
+++Q+LT MDG+ ++ +V ++GATNRP+ IDPA+ R GR D I I +P
Sbjct: 327 IVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVP 375
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 163 bits (397), Expect = 5e-41
Identities = 73/81 (90%), Positives = 78/81 (96%)
Frame = +2
Query: 11 DKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVR 190
+KF KFGM PS+GVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVR
Sbjct: 504 EKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVR 563
Query: 191 DIFDKARSASPCVLFFDELDS 253
+IFDKAR ++PCVLFFDELDS
Sbjct: 564 EIFDKARQSAPCVLFFDELDS 584
Score = 93.5 bits (222), Expect = 8e-20
Identities = 38/79 (48%), Positives = 57/79 (72%)
Frame = +2
Query: 17 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDI 196
F G++P +G+L YGPPG GKTL+A+A+ANE A F + GPE+++ GESE+N+R
Sbjct: 233 FKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKA 292
Query: 197 FDKARSASPCVLFFDELDS 253
F++A +P ++F DE+DS
Sbjct: 293 FEEAEKNAPSIIFIDEIDS 311
Score = 92.3 bits (219), Expect = 2e-19
Identities = 42/49 (85%), Positives = 45/49 (91%)
Frame = +1
Query: 307 VINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLP 453
V+NQ+LTEMDGM AKK VFIIGATNRPDIID A+LRPGRLD LIYIPLP
Sbjct: 604 VLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLP 652
Score = 55.2 bits (127), Expect = 3e-08
Identities = 24/49 (48%), Positives = 37/49 (75%)
Frame = +1
Query: 307 VINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLP 453
+++Q+LT MDG+ ++ +V ++GATNRP+ IDPA+ R GR D I I +P
Sbjct: 327 IVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVP 375
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 163 bits (396), Expect = 7e-41
Identities = 72/81 (88%), Positives = 78/81 (96%)
Frame = +2
Query: 11 DKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVR 190
+KF KFGM PS+GVLFYGPPGCGKTLLAKAIANECQANFIS+KGPELLTMWFGESEANVR
Sbjct: 505 EKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVR 564
Query: 191 DIFDKARSASPCVLFFDELDS 253
+IFDKAR ++PCVLFFDELDS
Sbjct: 565 EIFDKARQSAPCVLFFDELDS 585
Score = 95.5 bits (227), Expect = 2e-20
Identities = 43/49 (87%), Positives = 46/49 (93%)
Frame = +1
Query: 307 VINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLP 453
V+NQ+LTEMDGM AKK VFIIGATNRPDIIDPA+LRPGRLD LIYIPLP
Sbjct: 604 VLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 652
Score = 93.5 bits (222), Expect = 8e-20
Identities = 38/79 (48%), Positives = 57/79 (72%)
Frame = +2
Query: 17 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDI 196
F G++P +G+L YGPPG GKTL+A+A+ANE A F + GPE+++ GESE+N+R
Sbjct: 234 FKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKA 293
Query: 197 FDKARSASPCVLFFDELDS 253
F++A +P ++F DE+DS
Sbjct: 294 FEEAEKNAPSIIFIDEIDS 312
Score = 55.2 bits (127), Expect = 3e-08
Identities = 24/49 (48%), Positives = 37/49 (75%)
Frame = +1
Query: 307 VINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLP 453
+++Q+LT MDG+ ++ +V ++GATNRP+ IDPA+ R GR D I I +P
Sbjct: 328 IVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVP 376
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 124 bits (299), Expect = 4e-29
Identities = 55/75 (73%), Positives = 63/75 (84%)
Frame = +2
Query: 29 GMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 208
G++ GVL YGPPG GKTLLAKA+A EC NF+SVKGPEL+ M+ GESE NVRDIF+KA
Sbjct: 687 GLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFEKA 746
Query: 209 RSASPCVLFFDELDS 253
RSA PCV+FFDELDS
Sbjct: 747 RSARPCVIFFDELDS 761
Score = 65.7 bits (153), Expect = 2e-11
Identities = 27/47 (57%), Positives = 41/47 (87%), Gaps = 1/47 (2%)
Frame = +1
Query: 307 VINQILTEMDGMG-AKKNVFIIGATNRPDIIDPAILRPGRLDHLIYI 444
V++Q+L E+DG+ + +++FIIGA+NRPD+IDPA+LRPGR D L+Y+
Sbjct: 779 VVSQMLAEIDGLSDSSQDLFIIGASNRPDLIDPALLRPGRFDKLLYV 825
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 109 bits (262), Expect = 1e-24
Identities = 45/84 (53%), Positives = 63/84 (75%)
Frame = +2
Query: 11 DKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVR 190
D F + G +P G+L +GPPGC KTL+A+A+A+E + NF++VKGPEL + W GESE VR
Sbjct: 748 DAFKRIGTRPPSGILMFGPPGCSKTLMARAVASEAKLNFLAVKGPELFSKWVGESEKAVR 807
Query: 191 DIFDKARSASPCVLFFDELDSTQS 262
+F KAR+ +P ++FFDE+DS S
Sbjct: 808 SLFAKARANAPSIIFFDEIDSLAS 831
Score = 85.0 bits (201), Expect = 3e-17
Identities = 35/75 (46%), Positives = 53/75 (70%)
Frame = +2
Query: 29 GMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 208
G++P++GVL +GPPG GKT LA+ A NF SV GPE+++ + GESE + ++F A
Sbjct: 414 GLRPTKGVLIHGPPGTGKTSLARTFARHSGVNFFSVNGPEIISQYLGESEKALDEVFRSA 473
Query: 209 RSASPCVLFFDELDS 253
+A+P V+F D+LD+
Sbjct: 474 SNATPAVVFIDDLDA 488
Score = 60.9 bits (141), Expect = 5e-10
Identities = 26/52 (50%), Positives = 37/52 (71%)
Frame = +1
Query: 307 VINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLPTRS 462
V++Q+L E+DG+ + V +I ATNRPD ID A+LRPGR D L+Y+ P +
Sbjct: 846 VMSQLLVELDGLHQRVGVTVIAATNRPDKIDSALLRPGRFDRLLYVGPPNET 897
Score = 52.4 bits (120), Expect = 2e-07
Identities = 24/50 (48%), Positives = 33/50 (66%)
Frame = +1
Query: 307 VINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLPT 456
++ +L MDG+ V +I ATNRPD I+PA+ RPGRLD I I +P+
Sbjct: 504 MVATLLNLMDGISRTDGVVVIAATNRPDSIEPALRRPGRLDREIEIGVPS 553
>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 820
Score = 105 bits (252), Expect = 2e-23
Identities = 48/86 (55%), Positives = 62/86 (72%), Gaps = 1/86 (1%)
Frame = +2
Query: 11 DKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVR 190
D + FG+ G L YGPPGCGKTL+AKA ANE ANF+ +KG ELL + GESE +R
Sbjct: 552 DIYKAFGVDLETGFLLYGPPGCGKTLIAKAAANEAGANFMHIKGAELLNKYVGESELAIR 611
Query: 191 DIFDKARSASPCVLFFDELDS-TQSR 265
+F +AR+ +PCV+FFDE+D+ T SR
Sbjct: 612 TLFQRARTCAPCVIFFDEVDALTTSR 637
Score = 89.0 bits (211), Expect = 2e-18
Identities = 38/85 (44%), Positives = 56/85 (65%)
Frame = +2
Query: 11 DKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVR 190
+ F K G++P G+LF+GPPGCGKT LA AIANE F + E+++ G SE N+R
Sbjct: 257 EPFKKIGVKPPSGILFHGPPGCGKTKLANAIANEAGVPFYKISATEVISGVSGASEENIR 316
Query: 191 DIFDKARSASPCVLFFDELDSTQSR 265
++F KA +P ++F DE+D+ S+
Sbjct: 317 ELFSKAYRTAPSIVFIDEIDAIGSK 341
Score = 75.8 bits (178), Expect = 2e-14
Identities = 30/49 (61%), Positives = 42/49 (85%)
Frame = +1
Query: 307 VINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLP 453
++NQ L E+DG G ++NV++IGATNRPD++DPA LRPGR +L+Y+PLP
Sbjct: 648 LLNQFLVELDG-GERRNVYVIGATNRPDVVDPAFLRPGRFGNLLYVPLP 695
Score = 46.8 bits (106), Expect = 9e-06
Identities = 31/76 (40%), Positives = 40/76 (52%), Gaps = 10/76 (13%)
Frame = +1
Query: 307 VINQILTEMDGMGAK--KN--------VFIIGATNRPDIIDPAILRPGRLDHLIYIPLPT 456
++ Q+LT MDG G K KN V +IGATNRPD +DPA+ R GR + I + P
Sbjct: 353 IVTQLLTCMDGPGNKGDKNAPDSSAGFVLVIGATNRPDALDPALRRSGRFETEIALTAPD 412
Query: 457 RSPARPSCAPTFANRL 504
AR A +L
Sbjct: 413 ED-ARAEILSVVAQKL 427
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 98.7 bits (235), Expect = 2e-21
Identities = 46/79 (58%), Positives = 53/79 (67%)
Frame = +2
Query: 17 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDI 196
F K ++ VL YGPPGCGKT + A A C FISVKGPELL + G SE VRDI
Sbjct: 870 FAKSPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDI 929
Query: 197 FDKARSASPCVLFFDELDS 253
F KA +A+PC+LFFDE DS
Sbjct: 930 FSKAAAAAPCILFFDEFDS 948
Score = 66.1 bits (154), Expect = 1e-11
Identities = 27/50 (54%), Positives = 37/50 (74%)
Frame = +1
Query: 307 VINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLPT 456
V+NQ LTE+DG+ VF+ AT+RPD++DPA+LRPGRLD L+ P+
Sbjct: 964 VVNQFLTELDGVEVLTGVFVFAATSRPDLLDPALLRPGRLDRLLLCDFPS 1013
Score = 38.3 bits (85), Expect = 0.003
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Frame = +2
Query: 17 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIA------NECQANFISVKGPELLTMWFGESE 178
F KF + +L YGPPG GKT+LA+A A + A+ I V L
Sbjct: 585 FSKFKIPSPGHILIYGPPGSGKTILARAAAKYFEEQKDLLAHVILVSCSTLALEKVQHIH 644
Query: 179 ANVRDIFDKARSASPCVLFFDELDSTQSRAA 271
+ + + +P V+ D+LDS S ++
Sbjct: 645 HVLSSVIAEGLEHAPSVIILDDLDSIISSSS 675
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 97.9 bits (233), Expect = 4e-21
Identities = 44/81 (54%), Positives = 57/81 (70%)
Frame = +2
Query: 8 SDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANV 187
S F+K G+ P RG+L +GPPGC KT LAKA AN QA+F S+ EL +M+ GE EA +
Sbjct: 309 SAAFVKMGISPMRGILLHGPPGCSKTTLAKAAANAAQASFFSLSCAELFSMYVGEGEALL 368
Query: 188 RDIFDKARSASPCVLFFDELD 250
R+ F +AR ASP ++FFDE D
Sbjct: 369 RNTFQRARLASPSIIFFDEAD 389
Score = 61.7 bits (143), Expect = 3e-10
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Frame = +2
Query: 29 GMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 208
G++ RG+L YGPPG GKT L +A+ EC A+ I + + GESE +R+ F +A
Sbjct: 52 GLKWPRGLLLYGPPGTGKTSLVRAVVQECDAHLIVLSPHSVHRAHAGESEKVLREAFAEA 111
Query: 209 RSAS----PCVLFFDELD 250
S + P V+F DE+D
Sbjct: 112 SSHAVSDKPSVIFIDEID 129
Score = 59.3 bits (137), Expect = 2e-09
Identities = 23/49 (46%), Positives = 36/49 (73%)
Frame = +1
Query: 307 VINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLP 453
+++ +LTEMDG+ K + ++ ATNRP ID A++RPGR D ++Y+P P
Sbjct: 410 LLSTLLTEMDGLEEAKGILVLAATNRPYAIDAALMRPGRFDLVLYVPPP 458
Score = 39.5 bits (88), Expect = 0.001
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +1
Query: 307 VINQILTEMDG---MGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLP 453
+ +Q+ T MD + V ++ +TNR D IDPA+ R GR D L+ + P
Sbjct: 145 IASQLFTLMDSNKPSSSAPRVVVVASTNRVDAIDPALRRAGRFDALVEVSTP 196
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 96.3 bits (229), Expect = 1e-20
Identities = 43/81 (53%), Positives = 57/81 (70%)
Frame = +2
Query: 11 DKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVR 190
+KF+K G+ P +GVL YGPPG GKTLLA+A+AN A FI V G EL+ + GE VR
Sbjct: 192 EKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVR 251
Query: 191 DIFDKARSASPCVLFFDELDS 253
++F ARS C++FFDE+D+
Sbjct: 252 ELFQMARSKKACIVFFDEVDA 272
Score = 57.2 bits (132), Expect = 6e-09
Identities = 23/46 (50%), Positives = 34/46 (73%)
Frame = +1
Query: 316 QILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLP 453
+I+ ++DG A+ N+ ++ ATNRPD +DPA+LRPGRLD + LP
Sbjct: 294 EIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLP 339
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 95.5 bits (227), Expect = 2e-20
Identities = 42/81 (51%), Positives = 57/81 (70%)
Frame = +2
Query: 11 DKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVR 190
+KF++ G+ P +GVL YGPPG GKTL+A+A+AN A FI V G EL+ + GE VR
Sbjct: 229 EKFVRLGIDPPKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVR 288
Query: 191 DIFDKARSASPCVLFFDELDS 253
++F ARS C+LFFDE+D+
Sbjct: 289 ELFQMARSKKACILFFDEIDA 309
Score = 59.3 bits (137), Expect = 2e-09
Identities = 25/46 (54%), Positives = 35/46 (76%)
Frame = +1
Query: 316 QILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLP 453
+IL ++DG A+ N+ ++ ATNRPDI+DPA+LRPGRLD + LP
Sbjct: 331 EILYQLDGFDARGNIKVLMATNRPDILDPALLRPGRLDRKVEFCLP 376
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 92.3 bits (219), Expect = 2e-19
Identities = 39/83 (46%), Positives = 57/83 (68%)
Frame = +2
Query: 17 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDI 196
FL+ G++P +GVL YGPPG GKTLLA+AIA+ ANF+ V ++ + GES +R++
Sbjct: 165 FLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREM 224
Query: 197 FDKARSASPCVLFFDELDSTQSR 265
F+ AR PC++F DE+D+ R
Sbjct: 225 FNYAREHQPCIIFMDEIDAIGGR 247
Score = 58.8 bits (136), Expect = 2e-09
Identities = 26/46 (56%), Positives = 34/46 (73%)
Frame = +1
Query: 316 QILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLP 453
++L ++DG V +I ATNRPD++DPA+LRPGRLD I IPLP
Sbjct: 265 ELLNQLDGFDNLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLP 310
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 92.3 bits (219), Expect = 2e-19
Identities = 37/81 (45%), Positives = 57/81 (70%)
Frame = +2
Query: 11 DKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVR 190
++F K G++P +GVL YGPPG GKTL+A+A A + A F+ + GP+L+ M+ G+ VR
Sbjct: 195 ERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVR 254
Query: 191 DIFDKARSASPCVLFFDELDS 253
D F A+ +PC++F DE+D+
Sbjct: 255 DAFQLAKEKAPCIIFIDEIDA 275
Score = 54.4 bits (125), Expect = 5e-08
Identities = 22/47 (46%), Positives = 33/47 (70%)
Frame = +1
Query: 316 QILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLPT 456
++L ++DG + + + +I ATNR DI+DPA++R GRLD I P PT
Sbjct: 297 ELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPT 343
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 92.3 bits (219), Expect = 2e-19
Identities = 39/83 (46%), Positives = 57/83 (68%)
Frame = +2
Query: 17 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDI 196
FL+ G++P +GVL YGPPG GKTLLA+AIA+ ANF+ V ++ + GES +R++
Sbjct: 165 FLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREM 224
Query: 197 FDKARSASPCVLFFDELDSTQSR 265
F+ AR PC++F DE+D+ R
Sbjct: 225 FNYAREHQPCIIFMDEIDAIGGR 247
Score = 59.3 bits (137), Expect = 2e-09
Identities = 26/46 (56%), Positives = 34/46 (73%)
Frame = +1
Query: 316 QILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLP 453
++L ++DG V +I ATNRPD++DPA+LRPGRLD I IPLP
Sbjct: 265 ELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLP 310
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 91.5 bits (217), Expect = 3e-19
Identities = 38/81 (46%), Positives = 57/81 (70%)
Frame = +2
Query: 11 DKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVR 190
++F K G++P +GVL YGPPG GKTL+A+A A + A F+ + GP+L+ M+ G+ VR
Sbjct: 194 EQFEKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVR 253
Query: 191 DIFDKARSASPCVLFFDELDS 253
D F A+ SPC++F DE+D+
Sbjct: 254 DAFLLAKEKSPCIIFIDEIDA 274
Score = 53.6 bits (123), Expect = 8e-08
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = +1
Query: 316 QILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLPT 456
++L ++DG + + +I ATNR DI+DPA++R GRLD I P PT
Sbjct: 296 ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPT 342
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 91.1 bits (216), Expect = 4e-19
Identities = 39/74 (52%), Positives = 53/74 (71%)
Frame = +2
Query: 32 MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKAR 211
++P RG+L +GPPG GKT++AKAIANE A+FI+V + + WFGE E NVR +F A
Sbjct: 445 LKPCRGILLFGPPGTGKTMMAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAA 504
Query: 212 SASPCVLFFDELDS 253
SP ++F DE+DS
Sbjct: 505 KVSPTIIFVDEVDS 518
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 89.4 bits (212), Expect = 1e-18
Identities = 40/83 (48%), Positives = 55/83 (66%)
Frame = +2
Query: 5 TSDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEAN 184
T +KF G + +GVL GPPG GKTLLAKAIA E F S+ G E + M+ G +
Sbjct: 244 TPEKFSALGAKIPKGVLLTGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASR 303
Query: 185 VRDIFDKARSASPCVLFFDELDS 253
RD+F+KA++ SPC++F DE+D+
Sbjct: 304 ARDLFNKAKANSPCIVFIDEIDA 326
Score = 63.7 bits (148), Expect = 7e-11
Identities = 27/48 (56%), Positives = 34/48 (70%)
Frame = +1
Query: 310 INQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLP 453
+NQILTEMDG V +I ATNRP+I+D A+LRPGR D + + LP
Sbjct: 346 LNQILTEMDGFAGNTGVIVIAATNRPEILDSALLRPGRFDRQVSVGLP 393
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 89.4 bits (212), Expect = 1e-18
Identities = 39/74 (52%), Positives = 52/74 (70%)
Frame = +2
Query: 32 MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKAR 211
++P RG+L +GPPG GKT+LAKAIA E A+FI+V + + WFGE E NVR +F A
Sbjct: 552 LKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAS 611
Query: 212 SASPCVLFFDELDS 253
SP ++F DE+DS
Sbjct: 612 KVSPTIIFVDEVDS 625
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 89.4 bits (212), Expect = 1e-18
Identities = 39/74 (52%), Positives = 52/74 (70%)
Frame = +2
Query: 32 MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKAR 211
++P RG+L +GPPG GKT+LAKAIA E A+FI+V + + WFGE E NVR +F A
Sbjct: 547 LKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAS 606
Query: 212 SASPCVLFFDELDS 253
SP ++F DE+DS
Sbjct: 607 KVSPTIIFVDEVDS 620
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains Pfam
profile PF00004: ATPase, AAA family
Length = 1122
Score = 88.2 bits (209), Expect = 3e-18
Identities = 38/81 (46%), Positives = 52/81 (64%)
Frame = +2
Query: 35 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARS 214
+P +G+L +GPPG GKT+LAKA+A E ANFI++ + + WFGE E V+ +F A
Sbjct: 853 KPCKGILLFGPPGTGKTMLAKAVAKEADANFINISMSSITSKWFGEGEKYVKAVFSLASK 912
Query: 215 ASPCVLFFDELDSTQSRAAAP 277
SP V+F DE+DS R P
Sbjct: 913 MSPSVIFVDEVDSMLGRREHP 933
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 87.0 bits (206), Expect = 7e-18
Identities = 37/81 (45%), Positives = 53/81 (65%)
Frame = +2
Query: 35 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARS 214
+P++G+L +GPPG GKT+LAKA+A E ANFI++ + + WFGE E V+ +F A
Sbjct: 996 KPTKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASK 1055
Query: 215 ASPCVLFFDELDSTQSRAAAP 277
+P V+F DE+DS R P
Sbjct: 1056 IAPSVIFVDEVDSMLGRRENP 1076
>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
(KTN1) [Arabidopsis thaliana] GI:14133602
Length = 523
Score = 87.0 bits (206), Expect = 7e-18
Identities = 39/73 (53%), Positives = 50/73 (68%)
Frame = +2
Query: 35 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARS 214
+P +GVL +GPPG GKTLLAKA+A EC F +V L + W GESE VR +FD AR+
Sbjct: 270 RPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARA 329
Query: 215 ASPCVLFFDELDS 253
+P +F DE+DS
Sbjct: 330 YAPSTIFIDEIDS 342
Score = 35.9 bits (79), Expect = 0.017
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 8/57 (14%)
Frame = +1
Query: 307 VINQILTEMDGM--------GAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLP 453
V +++L ++DG+ G++K V ++ ATN P ID A+ R RL+ IYIPLP
Sbjct: 359 VKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEALRR--RLEKRIYIPLP 413
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 87.0 bits (206), Expect = 7e-18
Identities = 37/81 (45%), Positives = 53/81 (65%)
Frame = +2
Query: 35 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARS 214
+P++G+L +GPPG GKT+LAKA+A E ANFI++ + + WFGE E V+ +F A
Sbjct: 983 KPTKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASK 1042
Query: 215 ASPCVLFFDELDSTQSRAAAP 277
+P V+F DE+DS R P
Sbjct: 1043 IAPSVIFVDEVDSMLGRRENP 1063
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 86.6 bits (205), Expect = 9e-18
Identities = 38/79 (48%), Positives = 52/79 (65%)
Frame = +2
Query: 17 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDI 196
+ + G+ P RGVL YGPPG GKT+LAKA+AN A FI V G E + + GE VRD+
Sbjct: 181 YKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDV 240
Query: 197 FDKARSASPCVLFFDELDS 253
F A+ +P ++F DE+D+
Sbjct: 241 FRLAKENAPAIIFIDEVDA 259
Score = 61.3 bits (142), Expect = 4e-10
Identities = 28/55 (50%), Positives = 36/55 (65%)
Frame = +1
Query: 307 VINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLPTRSPAR 471
++ ++L +MDG NV +I ATNR D +DPA+LRPGRLD I PLP R R
Sbjct: 278 ILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKR 332
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 640
Score = 86.6 bits (205), Expect = 9e-18
Identities = 36/74 (48%), Positives = 52/74 (70%)
Frame = +2
Query: 32 MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKAR 211
++P +G+L +GPPG GKTLLAKA+A E ANFIS+ G L + WFG++E + +F A
Sbjct: 383 LRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFAT 442
Query: 212 SASPCVLFFDELDS 253
+P ++F DE+DS
Sbjct: 443 KLAPVIIFVDEIDS 456
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Frame = +1
Query: 313 NQILTEMDGMGAK--KNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLP 453
N+ + DG+ +K + + I+GATNRP +D A++R RL IY+ LP
Sbjct: 475 NEFMAAWDGLRSKDSQRILILGATNRPFDLDDAVIR--RLPRRIYVDLP 521
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 86.2 bits (204), Expect = 1e-17
Identities = 36/74 (48%), Positives = 52/74 (70%)
Frame = +2
Query: 32 MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKAR 211
++P +G+L +GPPG GKTLLAKA+A E ANFIS+ G L + WFG++E + +F A
Sbjct: 182 LRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFAS 241
Query: 212 SASPCVLFFDELDS 253
+P ++F DE+DS
Sbjct: 242 KLAPVIIFVDEVDS 255
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Frame = +1
Query: 313 NQILTEMDGMGAK--KNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLP 453
N+ + DG+ +K + + I+GATNRP +D A++R RL IY+ LP
Sbjct: 274 NEFMAAWDGLRSKDSQRILILGATNRPFDLDDAVIR--RLPRRIYVDLP 320
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 86.2 bits (204), Expect = 1e-17
Identities = 38/81 (46%), Positives = 53/81 (65%)
Frame = +2
Query: 11 DKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVR 190
++F G + +GVL GPPG GKTLLAKAIA E F S+ G E + M+ G + VR
Sbjct: 250 ERFTAVGAKIPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVR 309
Query: 191 DIFDKARSASPCVLFFDELDS 253
D+F KA+ +PC++F DE+D+
Sbjct: 310 DLFKKAKENAPCIVFVDEIDA 330
Score = 59.3 bits (137), Expect = 2e-09
Identities = 24/48 (50%), Positives = 33/48 (68%)
Frame = +1
Query: 310 INQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLP 453
+NQ+LTEMDG V ++ ATNR DI+D A+LRPGR D + + +P
Sbjct: 350 LNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVP 397
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 86.2 bits (204), Expect = 1e-17
Identities = 38/81 (46%), Positives = 53/81 (65%)
Frame = +2
Query: 11 DKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVR 190
++F G + +GVL GPPG GKTLLAKAIA E F S+ G E + M+ G + VR
Sbjct: 243 ERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVR 302
Query: 191 DIFDKARSASPCVLFFDELDS 253
D+F KA+ +PC++F DE+D+
Sbjct: 303 DLFKKAKENAPCIVFVDEIDA 323
Score = 59.3 bits (137), Expect = 2e-09
Identities = 24/48 (50%), Positives = 33/48 (68%)
Frame = +1
Query: 310 INQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLP 453
+NQ+LTEMDG V ++ ATNR DI+D A+LRPGR D + + +P
Sbjct: 343 LNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVP 390
>At4g23940.1 68417.m03443 FtsH protease, putative contains
similarity to zinc dependent protease GI:7650138 from
[Arabidopsis thaliana]
Length = 946
Score = 85.8 bits (203), Expect = 2e-17
Identities = 39/85 (45%), Positives = 53/85 (62%)
Frame = +2
Query: 11 DKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVR 190
D F K G++P GVL GPPGCGKTL+AKAIA E F + G E + + G A +R
Sbjct: 453 DLFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIR 512
Query: 191 DIFDKARSASPCVLFFDELDSTQSR 265
D+F +A+ P V+F DE+D+ +R
Sbjct: 513 DLFKRAKVNKPSVIFIDEIDALATR 537
Score = 59.3 bits (137), Expect = 2e-09
Identities = 28/72 (38%), Positives = 38/72 (52%)
Frame = +1
Query: 238 RRAGLHAKXXXXXXXXXXXXXXXVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRP 417
RR G+ + +NQ+L E+DG K V +GATNR D++DPA+LRP
Sbjct: 537 RRQGIFKENSDQLYNAATQERETTLNQLLIELDGFDTGKGVIFLGATNRRDLLDPALLRP 596
Query: 418 GRLDHLIYIPLP 453
GR D I + P
Sbjct: 597 GRFDRKIRVRPP 608
>At2g45500.1 68415.m05659 AAA-type ATPase family protein similar to
SP|Q9QYY8 Spastin (Fragment) {Mus musculus}; contains
Pfam profiles PF00004: ATPase AAA family, PF04212: MIT
domain
Length = 487
Score = 85.4 bits (202), Expect = 2e-17
Identities = 38/76 (50%), Positives = 52/76 (68%)
Frame = +2
Query: 35 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARS 214
+P+RG+L +GPPG GKT+LAKA+A+E QA F +V L + W GE+E V+ +F A S
Sbjct: 247 RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEAEKLVKTLFQVAIS 306
Query: 215 ASPCVLFFDELDSTQS 262
P V+F DE+DS S
Sbjct: 307 RQPSVIFMDEIDSIMS 322
Score = 40.7 bits (91), Expect = 6e-04
Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Frame = +1
Query: 313 NQILTEMDGMGAKKN--VFIIGATNRPDIIDPAILRPGRLDHLIYIPLP 453
++ L + DG+ + + V IIGATN+P +D A+LR RL IY+PLP
Sbjct: 337 SEFLIQFDGVTSNPDDLVIIIGATNKPQELDDAVLR--RLVKRIYVPLP 383
>At5g53540.1 68418.m06653 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 403
Score = 84.6 bits (200), Expect = 4e-17
Identities = 37/72 (51%), Positives = 50/72 (69%)
Frame = +2
Query: 38 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSA 217
P +GVL YGPPG GKT+LAKAIA E +A FI+VK L++ WFG+++ V +F A
Sbjct: 121 PQKGVLLYGPPGTGKTMLAKAIARESEAVFINVKVSNLMSKWFGDAQKLVSAVFSLAYKL 180
Query: 218 SPCVLFFDELDS 253
P ++F DE+DS
Sbjct: 181 QPAIIFIDEVDS 192
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +1
Query: 334 DGMGAKKN--VFIIGATNRPDIIDPAILR 414
DG +N V ++ ATNRP +D AILR
Sbjct: 217 DGFTTDQNARVMVLAATNRPSELDEAILR 245
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 83.4 bits (197), Expect = 9e-17
Identities = 35/81 (43%), Positives = 54/81 (66%)
Frame = +2
Query: 11 DKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVR 190
+K+++ G +P RGVL G PG GKTLLAKA+A E + FIS E + ++ G + VR
Sbjct: 348 EKYVRLGARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVR 407
Query: 191 DIFDKARSASPCVLFFDELDS 253
D+F +A+ +P ++F DE+D+
Sbjct: 408 DLFARAKKEAPSIIFIDEIDA 428
Score = 62.9 bits (146), Expect = 1e-10
Identities = 24/50 (48%), Positives = 36/50 (72%)
Frame = +1
Query: 310 INQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLPTR 459
+NQ+LTEMDG + V ++GATNR D++DPA+ RPGR D ++ + P +
Sbjct: 449 LNQLLTEMDGFDSNSAVIVLGATNRADVLDPALRRPGRFDRVVTVETPDK 498
>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
protease GI:13183728 from [Medicago sativa]
Length = 704
Score = 83.0 bits (196), Expect = 1e-16
Identities = 36/88 (40%), Positives = 54/88 (61%)
Frame = +2
Query: 11 DKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVR 190
DK+ G + +G L GPPG GKTLLA+A+A E F S E + ++ G + VR
Sbjct: 273 DKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVR 332
Query: 191 DIFDKARSASPCVLFFDELDSTQSRAAA 274
D+F+KA+S +PC++F DE+D+ + A
Sbjct: 333 DLFEKAKSKAPCIVFIDEIDAVGRQRGA 360
Score = 62.5 bits (145), Expect = 2e-10
Identities = 25/48 (52%), Positives = 33/48 (68%)
Frame = +1
Query: 310 INQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLP 453
INQ+LTEMDG V ++ ATNRPD++D A+LRPGR D + + P
Sbjct: 373 INQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRP 420
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 83.0 bits (196), Expect = 1e-16
Identities = 38/82 (46%), Positives = 51/82 (62%)
Frame = +2
Query: 17 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDI 196
F G+ +GVL YGPPG GKTLLA+A+A+ FI V G EL+ + GE VR++
Sbjct: 187 FESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVREL 246
Query: 197 FDKARSASPCVLFFDELDSTQS 262
F AR +P ++F DE+DS S
Sbjct: 247 FVMAREHAPSIIFMDEIDSIGS 268
Score = 50.0 bits (114), Expect = 1e-06
Identities = 21/46 (45%), Positives = 31/46 (67%)
Frame = +1
Query: 316 QILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLP 453
++L ++DG A + ++ ATNR DI+D A+LRPGR+D I P P
Sbjct: 288 ELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNP 333
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 83.0 bits (196), Expect = 1e-16
Identities = 38/82 (46%), Positives = 51/82 (62%)
Frame = +2
Query: 17 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDI 196
F G+ +GVL YGPPG GKTLLA+A+A+ FI V G EL+ + GE VR++
Sbjct: 187 FESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVREL 246
Query: 197 FDKARSASPCVLFFDELDSTQS 262
F AR +P ++F DE+DS S
Sbjct: 247 FVMAREHAPSIIFMDEIDSIGS 268
Score = 50.0 bits (114), Expect = 1e-06
Identities = 21/46 (45%), Positives = 31/46 (67%)
Frame = +1
Query: 316 QILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLP 453
++L ++DG A + ++ ATNR DI+D A+LRPGR+D I P P
Sbjct: 288 ELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNP 333
>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
sorting protein-related similar to SP|P46467 SKD1
protein (Vacuolar sorting protein 4b) {Mus musculus};
contains Pfam profiles PF00004: ATPase AAA family,
PF04212: MIT domain
Length = 435
Score = 83.0 bits (196), Expect = 1e-16
Identities = 35/73 (47%), Positives = 50/73 (68%)
Frame = +2
Query: 35 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARS 214
+P R L YGPPG GK+ LAKA+A E + F SV +L++ W GESE V ++F+ AR
Sbjct: 163 RPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFEMARE 222
Query: 215 ASPCVLFFDELDS 253
++P ++F DE+DS
Sbjct: 223 SAPSIIFVDEIDS 235
Score = 39.5 bits (88), Expect = 0.001
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +1
Query: 316 QILTEMDGMGAK-KNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLP 453
++L +M G+G + V ++ ATN P +D AI R R D IYIPLP
Sbjct: 255 ELLVQMQGVGHNDEKVLVLAATNTPYALDQAIRR--RFDKRIYIPLP 299
>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
division protein ftsH homolog 1, chloroplast
precursor (EC 3.4.24.-) [Arabidopsis thaliana]
Length = 716
Score = 83.0 bits (196), Expect = 1e-16
Identities = 36/88 (40%), Positives = 54/88 (61%)
Frame = +2
Query: 11 DKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVR 190
DK+ G + +G L GPPG GKTLLA+A+A E F S E + ++ G + VR
Sbjct: 285 DKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVR 344
Query: 191 DIFDKARSASPCVLFFDELDSTQSRAAA 274
D+F+KA+S +PC++F DE+D+ + A
Sbjct: 345 DLFEKAKSKAPCIVFIDEIDAVGRQRGA 372
Score = 62.5 bits (145), Expect = 2e-10
Identities = 25/48 (52%), Positives = 33/48 (68%)
Frame = +1
Query: 310 INQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLP 453
INQ+LTEMDG V ++ ATNRPD++D A+LRPGR D + + P
Sbjct: 385 INQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRP 432
>At5g58870.1 68418.m07376 FtsH protease, putative contains
similarity to cell division protein FtsH homolog 3
SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
sp.}
Length = 806
Score = 82.6 bits (195), Expect = 1e-16
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +2
Query: 11 DKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVR 190
D++++ G +P RGVL G PG GKTLLAKA+A E FIS E + ++ G + VR
Sbjct: 352 DRYVRLGARPPRGVLLVGLPGTGKTLLAKAVAGESDVPFISCSASEFVELYVGMGASRVR 411
Query: 191 DIFDKARSASPCVLFFDELDS 253
D+F +A+ +P ++F DE+D+
Sbjct: 412 DLFARAKKEAPSIIFIDEIDA 432
Score = 62.5 bits (145), Expect = 2e-10
Identities = 24/50 (48%), Positives = 36/50 (72%)
Frame = +1
Query: 310 INQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLPTR 459
+NQ+LTEMDG + V ++GATNR D++DPA+ RPGR D ++ + P +
Sbjct: 453 LNQLLTEMDGFDSSSAVIVLGATNRADVLDPALRRPGRFDRVVTVESPDK 502
>At3g02450.1 68416.m00232 cell division protein ftsH, putative
similar to SWISS-PROT:P46469 cell division protein ftsH
homolog [Lactococcus lactis]; contains Pfam domain,
PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with
diverse cellular 'A'ctivities)
Length = 622
Score = 82.6 bits (195), Expect = 1e-16
Identities = 38/82 (46%), Positives = 51/82 (62%)
Frame = +2
Query: 8 SDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANV 187
S + K G + RGVL GPPG GKTLLA+A+A E F SV E + ++ G A +
Sbjct: 356 SINYKKLGARLPRGVLLVGPPGTGKTLLARAVAGEAGVPFFSVSASEFVELFVGRGAARI 415
Query: 188 RDIFDKARSASPCVLFFDELDS 253
RD+F+ AR SP ++F DELD+
Sbjct: 416 RDLFNAARKNSPSIIFIDELDA 437
Score = 54.4 bits (125), Expect = 5e-08
Identities = 23/54 (42%), Positives = 33/54 (61%)
Frame = +1
Query: 310 INQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLPTRSPAR 471
+NQ+LTEMDG + V +I ATNRP+ +D A+ RPGR + + P + R
Sbjct: 454 LNQLLTEMDGFESDTKVIVIAATNRPEALDSALCRPGRFSRKVLVAEPDQEGRR 507
>At2g34560.2 68415.m04246 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 393
Score = 82.6 bits (195), Expect = 1e-16
Identities = 33/78 (42%), Positives = 52/78 (66%)
Frame = +2
Query: 32 MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKAR 211
+ P +G+L +GPPG GKT+LAKA+A EC F ++ +++ W G+SE +R +FD AR
Sbjct: 142 LTPWKGILLFGPPGTGKTMLAKAVATECNTTFFNISASSVVSKWRGDSEKLIRVLFDLAR 201
Query: 212 SASPCVLFFDELDSTQSR 265
+P +F DE+D+ S+
Sbjct: 202 HHAPSTIFLDEIDAIISQ 219
Score = 36.7 bits (81), Expect = 0.010
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +1
Query: 316 QILTEMDGMGAKKN-VFIIGATNRPDIIDPAILRPGRLDHLIYIPLP 453
++L +MDG+ VF++ ATN P +D A+LR RL+ I +PLP
Sbjct: 237 ELLIQMDGLQKTNELVFVLAATNLPWELDAAMLR--RLEKRILVPLP 281
>At2g34560.1 68415.m04245 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 384
Score = 82.6 bits (195), Expect = 1e-16
Identities = 33/78 (42%), Positives = 52/78 (66%)
Frame = +2
Query: 32 MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKAR 211
+ P +G+L +GPPG GKT+LAKA+A EC F ++ +++ W G+SE +R +FD AR
Sbjct: 133 LTPWKGILLFGPPGTGKTMLAKAVATECNTTFFNISASSVVSKWRGDSEKLIRVLFDLAR 192
Query: 212 SASPCVLFFDELDSTQSR 265
+P +F DE+D+ S+
Sbjct: 193 HHAPSTIFLDEIDAIISQ 210
Score = 36.7 bits (81), Expect = 0.010
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +1
Query: 316 QILTEMDGMGAKKN-VFIIGATNRPDIIDPAILRPGRLDHLIYIPLP 453
++L +MDG+ VF++ ATN P +D A+LR RL+ I +PLP
Sbjct: 228 ELLIQMDGLQKTNELVFVLAATNLPWELDAAMLR--RLEKRILVPLP 272
>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
zinc dependent protease [Arabidopsis thaliana]
GI:7650138; contains Pfam profile PF00004: ATPase AAA
family
Length = 855
Score = 81.0 bits (191), Expect = 5e-16
Identities = 36/89 (40%), Positives = 56/89 (62%)
Frame = +2
Query: 11 DKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVR 190
++F G+ +GVL +GPPG GKTLLAKAIA E F + G + + M+ G + + V+
Sbjct: 339 EEFQNKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGLPFFAANGTDFVEMFVGVAASRVK 398
Query: 191 DIFDKARSASPCVLFFDELDSTQSRAAAP 277
D+F +RS +P ++F DE+D+ S+ P
Sbjct: 399 DLFASSRSYAPSIIFIDEIDAIGSKRGGP 427
Score = 58.0 bits (134), Expect = 4e-09
Identities = 28/49 (57%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
Frame = +1
Query: 316 QILTEMDGMGAKKN-VFIIGATNRPDIIDPAILRPGRLDHLIYIPLPTR 459
QILTEMDG + V +IGATNR DI+DPA+LR GR D +I + LP++
Sbjct: 442 QILTEMDGFKVTTSQVLVIGATNRLDILDPALLRKGRFDKIIRVGLPSK 490
>At2g26140.1 68415.m03137 FtsH protease, putative contains
similarity to YME1 GI:295582, a member of the
ftsH-SEC18-PAS1-CDC48 family of putative ATPase-encoding
genes from [Saccharomyces cerevisiae]
Length = 717
Score = 81.0 bits (191), Expect = 5e-16
Identities = 36/80 (45%), Positives = 49/80 (61%)
Frame = +2
Query: 14 KFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRD 193
+F + G + +GVL GPPG GKT+LA+AIA E F S G E M+ G VRD
Sbjct: 251 RFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRD 310
Query: 194 IFDKARSASPCVLFFDELDS 253
+F A+ SPC++F DE+D+
Sbjct: 311 LFSAAKKCSPCIIFIDEIDA 330
Score = 52.4 bits (120), Expect = 2e-07
Identities = 20/48 (41%), Positives = 32/48 (66%)
Frame = +1
Query: 310 INQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLP 453
+NQ+L E+DG + + ++ ATN P+ +D A++RPGR D I +P P
Sbjct: 347 LNQMLVELDGFKQNEGIIVVAATNFPESLDKALVRPGRFDRHIVVPNP 394
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 80.6 bits (190), Expect = 6e-16
Identities = 35/79 (44%), Positives = 52/79 (65%)
Frame = +2
Query: 29 GMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 208
G++P +GV+ YG PG GKTLLAKA+AN A F+ V G EL+ + G+ VR++F A
Sbjct: 218 GIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVA 277
Query: 209 RSASPCVLFFDELDSTQSR 265
SP ++F DE+D+ ++
Sbjct: 278 DDLSPSIVFIDEIDAVGTK 296
Score = 52.4 bits (120), Expect = 2e-07
Identities = 22/46 (47%), Positives = 34/46 (73%)
Frame = +1
Query: 316 QILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLP 453
++L ++DG ++ +V +I ATNR + +DPA+LRPGR+D I PLP
Sbjct: 314 ELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLP 359
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 80.6 bits (190), Expect = 6e-16
Identities = 35/79 (44%), Positives = 52/79 (65%)
Frame = +2
Query: 29 GMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKA 208
G++P +GV+ YG PG GKTLLAKA+AN A F+ V G EL+ + G+ VR++F A
Sbjct: 218 GIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVA 277
Query: 209 RSASPCVLFFDELDSTQSR 265
SP ++F DE+D+ ++
Sbjct: 278 DDLSPSIVFIDEIDAVGTK 296
Score = 52.4 bits (120), Expect = 2e-07
Identities = 22/46 (47%), Positives = 34/46 (73%)
Frame = +1
Query: 316 QILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLP 453
++L ++DG ++ +V +I ATNR + +DPA+LRPGR+D I PLP
Sbjct: 314 ELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLP 359
>At4g27680.1 68417.m03980 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 398
Score = 80.2 bits (189), Expect = 8e-16
Identities = 35/72 (48%), Positives = 49/72 (68%)
Frame = +2
Query: 38 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSA 217
P +GVL YGPPG GKT+LAKAIA E A FI+V+ L++ WFG+++ V +F A
Sbjct: 118 PQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRVSNLMSKWFGDAQKLVSAVFSLAYKL 177
Query: 218 SPCVLFFDELDS 253
P ++F DE++S
Sbjct: 178 QPAIIFIDEVES 189
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +1
Query: 358 VFIIGATNRPDIIDPAILRPGRLDHLIYIPLPTR 459
V ++ ATNRP +D AILR RL I +P R
Sbjct: 224 VMVLAATNRPSELDEAILR--RLPQAFEIGIPDR 255
>At3g27120.1 68416.m03393 spastin ATPase, putative similar to
SWISS-PROT:Q9QYY8 spastin (Fragment) [Mus musculus];
contains Pfam domain, PF00004: ATPase, AAA family
Length = 287
Score = 77.8 bits (183), Expect = 4e-15
Identities = 34/76 (44%), Positives = 46/76 (60%)
Frame = +2
Query: 38 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSA 217
P +G+L +GPPG GKT++ KAIA E +A F + L + W GE E VR +F A
Sbjct: 42 PGKGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCR 101
Query: 218 SPCVLFFDELDSTQSR 265
P V+F DE+DS S+
Sbjct: 102 QPAVIFVDEIDSLLSQ 117
Score = 41.5 bits (93), Expect = 3e-04
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = +1
Query: 316 QILTEMDGMGA-KKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLPTRSPAR 471
Q L EM+G + + + +IGATNRP +D A R RL +YIPLP+ S AR
Sbjct: 133 QFLIEMEGFDSGSEQILLIGATNRPQELDEAARR--RLTKRLYIPLPS-SEAR 182
>At2g29080.1 68415.m03535 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 809
Score = 77.4 bits (182), Expect = 6e-15
Identities = 34/80 (42%), Positives = 50/80 (62%)
Frame = +2
Query: 14 KFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRD 193
K+ G + +G L GPPG GKTLLAKA A E F+S+ G + + M+ G + VR
Sbjct: 346 KYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRH 405
Query: 194 IFDKARSASPCVLFFDELDS 253
+F +AR A+P ++F DE+D+
Sbjct: 406 LFQEARQAAPSIIFIDEIDA 425
Score = 60.5 bits (140), Expect = 7e-10
Identities = 26/48 (54%), Positives = 32/48 (66%)
Frame = +1
Query: 310 INQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLP 453
+NQ+L EMDG G V ++ TNRPDI+D A+LRPGR D I I P
Sbjct: 445 LNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKP 492
>At1g07510.1 68414.m00804 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 813
Score = 77.0 bits (181), Expect = 7e-15
Identities = 33/80 (41%), Positives = 50/80 (62%)
Frame = +2
Query: 14 KFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRD 193
K+ G + +G L GPPG GKTLLAKA A E F+S+ G + + M+ G + VR+
Sbjct: 351 KYEDLGAKIPKGALLVGPPGTGKTLLAKATAGESAVPFLSISGSDFMEMFVGVGPSRVRN 410
Query: 194 IFDKARSASPCVLFFDELDS 253
+F +AR +P ++F DE+D+
Sbjct: 411 LFQEARQCAPSIIFIDEIDA 430
Score = 60.5 bits (140), Expect = 7e-10
Identities = 26/48 (54%), Positives = 32/48 (66%)
Frame = +1
Query: 310 INQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLP 453
+NQ+L EMDG G V ++ TNRPDI+D A+LRPGR D I I P
Sbjct: 451 LNQLLVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKP 498
>At5g53170.1 68418.m06610 FtsH protease, putative similar to
ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
musculus]
Length = 806
Score = 73.3 bits (172), Expect = 9e-14
Identities = 35/83 (42%), Positives = 47/83 (56%)
Frame = +2
Query: 14 KFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRD 193
KF + G + +G+L G PG GKTLLAKAIA E F G E M+ G VR
Sbjct: 386 KFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRS 445
Query: 194 IFDKARSASPCVLFFDELDSTQS 262
+F A+ +PC++F DE+D+ S
Sbjct: 446 LFQAAKKKAPCIIFIDEIDAVGS 468
Score = 58.4 bits (135), Expect = 3e-09
Identities = 23/48 (47%), Positives = 33/48 (68%)
Frame = +1
Query: 310 INQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLP 453
++Q+L EMDG + + ++ ATN PDI+DPA+ RPGR D I +P P
Sbjct: 481 LHQLLVEMDGFEQNEGIIVMAATNLPDILDPALTRPGRFDRHIVVPSP 528
>At3g16290.1 68416.m02056 FtsH protease, putative contains
similarity to cell division protein FtsH GI:1652085 from
[Synechocystis sp. PCC 6803]
Length = 876
Score = 73.3 bits (172), Expect = 9e-14
Identities = 32/81 (39%), Positives = 51/81 (62%)
Frame = +2
Query: 11 DKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVR 190
+ + + G++ G+L GPPG GKTLLAKA+A E NF S+ + + ++ G + VR
Sbjct: 433 EMYRRRGVKIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVR 492
Query: 191 DIFDKARSASPCVLFFDELDS 253
++ +AR +P V+F DELD+
Sbjct: 493 ALYQEARENAPSVVFIDELDA 513
Score = 62.1 bits (144), Expect = 2e-10
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = +1
Query: 310 INQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLP 453
+NQ+L +DG + V I +TNRPDI+DPA++RPGR D I+IP P
Sbjct: 533 LNQLLVSLDGFEGRGEVITIASTNRPDILDPALVRPGRFDRKIFIPKP 580
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 72.9 bits (171), Expect = 1e-13
Identities = 33/83 (39%), Positives = 53/83 (63%), Gaps = 5/83 (6%)
Frame = +2
Query: 17 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEA 181
F + + P RGVL GPPG GKTL+A+A+A + +F KG ++L+ W GE+E
Sbjct: 407 FASYSITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAER 466
Query: 182 NVRDIFDKARSASPCVLFFDELD 250
++ +F++A+ P ++FFDE+D
Sbjct: 467 QLKLLFEEAQRNQPSIIFFDEID 489
Score = 49.2 bits (112), Expect = 2e-06
Identities = 22/49 (44%), Positives = 31/49 (63%)
Frame = +1
Query: 307 VINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLP 453
+++ +L MDG+ ++ V +IGATNR D ID A+ RPGR D LP
Sbjct: 506 IVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFSLP 554
>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 1025
Score = 69.7 bits (163), Expect = 1e-12
Identities = 32/77 (41%), Positives = 47/77 (61%)
Frame = +2
Query: 35 QPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARS 214
+P G+L +GP G GKT+LAKA+A E AN I++ ++ WF E E V+ +F A
Sbjct: 768 KPCNGILLFGPSGTGKTMLAKAVATEAGANLINMS----MSRWFSEGEKYVKAVFSLASK 823
Query: 215 ASPCVLFFDELDSTQSR 265
SP ++F DE++S R
Sbjct: 824 ISPSIIFLDEVESMLHR 840
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 67.3 bits (157), Expect = 6e-12
Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = +2
Query: 17 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFGESEANVRD 193
F + G + RGVL G G GKT LA AIA E + ++V+ EL +W G+S ANVR+
Sbjct: 449 FQEMGARAPRGVLIVGERGTGKTSLALAIAAEARVPVVNVEAQELEAGLWVGQSAANVRE 508
Query: 194 IFDKARSASPCVLFFDELD 250
+F AR +P ++F ++ D
Sbjct: 509 LFQTARDLAPVIIFVEDFD 527
Score = 44.4 bits (100), Expect = 5e-05
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +1
Query: 310 INQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLPT 456
INQ+L E+DG + V ++ T ID A+ RPGR+D + ++ PT
Sbjct: 548 INQLLVELDGFEKQDGVVLMATTRNHKQIDEALRRPGRMDRVFHLQSPT 596
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 62.1 bits (144), Expect = 2e-10
Identities = 26/50 (52%), Positives = 37/50 (74%)
Frame = +1
Query: 307 VINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLPT 456
V++ +L +DG+ ++ +V +IGATN PD IDPA+ RPGR D IY PLP+
Sbjct: 844 VVSTLLALLDGLKSRGSVVVIGATNYPDAIDPALRRPGRFDREIYFPLPS 893
Score = 60.5 bits (140), Expect = 7e-10
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Frame = +2
Query: 17 FLKFGMQPSRGVLFYGPPGCGKTLLAKA-IANECQAN----FISVKGPELLTMWFGESEA 181
F G+ P RG+L +G PG GKTL+ +A I + + N + + KG + L + G++E
Sbjct: 745 FDNLGLTPPRGILLHGHPGTGKTLVVRALIGSLARGNRRIAYFARKGADCLGKYVGDAER 804
Query: 182 NVRDIFDKARSASPCVLFFDELD 250
+R +F A P ++FFDE+D
Sbjct: 805 QLRLLFQVAEKCQPSIIFFDEID 827
>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
SP|P18708 Vesicular-fusion protein NSF
(N-ethylmaleimide-sensitive fusion protein)
(NEM-sensitive fusion protein) {Cricetulus griseus};
contains Pfam profiles PF00004: ATPase AAA family,
PF02359: Cell division protein 48 (CDC48) N-terminal
domain; contains non-consensus AT-AC splice sites at
intron 2
Length = 742
Score = 61.7 bits (143), Expect = 3e-10
Identities = 26/49 (53%), Positives = 38/49 (77%)
Frame = +1
Query: 307 VINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLP 453
++NQ+LT++DG+ A NV +IG TNR D++D A+LRPGRL+ + I LP
Sbjct: 347 IVNQLLTKIDGVEALNNVLLIGMTNRKDLLDEALLRPGRLEVQVEISLP 395
Score = 58.4 bits (135), Expect = 3e-09
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 9/86 (10%)
Frame = +2
Query: 23 KFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFIS-VKGPELLTMWFGESEANVRDIF 199
+ G++ +G+L +GPPG GKTL+A+ I V GPE+L+ + GE+E NVRD+F
Sbjct: 244 RLGIKHVKGMLLFGPPGTGKTLMARQIGKMLNGKDPKIVNGPEVLSKFVGETEKNVRDLF 303
Query: 200 DKAR-------SASPC-VLFFDELDS 253
A AS V+ FDE+D+
Sbjct: 304 ADAEQDQRTLGDASELHVIIFDEIDA 329
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +2
Query: 53 LFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE--ANVRDIFDKARSASPC 226
L GP G GKT LA I + ++ + E + + ES A++ +F+ A +
Sbjct: 534 LLEGPSGSGKTALAATIGIDSDFPYVKIVSAETM-IGLSESTKCAHIVKVFEDAYKSPMS 592
Query: 227 VLFFDELD 250
++ D+++
Sbjct: 593 IIILDDIE 600
>At1g79560.1 68414.m09275 FtsH protease, putative contains
similarity to chloroplast FtsH protease GI:5804782 from
[Nicotiana tabacum]
Length = 1008
Score = 56.0 bits (129), Expect = 1e-08
Identities = 30/76 (39%), Positives = 40/76 (52%)
Frame = +2
Query: 44 RGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSASP 223
RGVL GPPG GKTL A+ +A E F+ G E T A + ++F AR +P
Sbjct: 527 RGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAE-FTDSEKSGAAKINEMFSIARRNAP 585
Query: 224 CVLFFDELDSTQSRAA 271
+F DE+D+ R A
Sbjct: 586 AFVFVDEIDAIAGRHA 601
Score = 40.7 bits (91), Expect = 6e-04
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +1
Query: 325 TEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLP 453
T +D ++ V I ATNRPD +D +R GR+D +YI LP
Sbjct: 625 TGIDRFSLRQAVIFICATNRPDELDLEFVRSGRIDRRLYIGLP 667
>At4g04180.1 68417.m00593 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 609
Score = 54.8 bits (126), Expect = 3e-08
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +2
Query: 23 KFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFD 202
KF R VLF GPPG GKT A+ IAN+ + V +++ ++GESE + +F
Sbjct: 355 KFESNRPRAVLFEGPPGTGKTSCARVIANQAGIPLLYVPLEAVMSKYYGESERLLGAVFS 414
Query: 203 KARS-ASPCVLFFDELDS 253
+A ++F DE+D+
Sbjct: 415 QANELPDGAIIFLDEIDA 432
Score = 41.1 bits (92), Expect = 5e-04
Identities = 23/68 (33%), Positives = 37/68 (54%)
Frame = +1
Query: 307 VINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLPTRSPARPSCAP 486
V++ +L ++DG +K V +I ATNR +DPA++ R D +I LP R
Sbjct: 448 VLSVLLRQIDGFEQEKKVVVIAATNRKQDLDPALI--SRFDSMIMFDLPDLQ-TRQEIIA 504
Query: 487 TFANRLSQ 510
+A +LS+
Sbjct: 505 QYAKQLSK 512
>At2g18330.1 68415.m02136 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 636
Score = 51.6 bits (118), Expect = 3e-07
Identities = 24/73 (32%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Frame = +2
Query: 38 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSA 217
P R ++FYGPPG GKT++A+ IA + ++ + G ++ + ++ + +IFD A+ +
Sbjct: 384 PFRNMMFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLG-AQAVTKIHEIFDWAKKS 442
Query: 218 SP-CVLFFDELDS 253
+ +LF DE D+
Sbjct: 443 NKGLLLFIDEADA 455
>At4g36580.1 68417.m05193 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 620
Score = 50.8 bits (116), Expect = 6e-07
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Frame = +2
Query: 38 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSA 217
P R ++FYGPPG GKT++A+ IA + ++ + G ++ + ++ + IFD A+ +
Sbjct: 369 PFRNMMFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLG-SQAVTKIHQIFDWAKKS 427
Query: 218 SP-CVLFFDELDS 253
+ +LF DE D+
Sbjct: 428 NKGLLLFIDEADA 440
>At5g16930.1 68418.m01984 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 644
Score = 48.0 bits (109), Expect = 4e-06
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = +2
Query: 38 PSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFD-KARS 214
P R +LFYGPPG GKT+ A+ +A ++ + G ++ + ++ + +FD +S
Sbjct: 397 PFRNILFYGPPGTGKTMAARELARRSGLDYALMTGGDVAPLG-AQAVTKIHQLFDWSKKS 455
Query: 215 ASPCVLFFDELDS 253
+LF DE D+
Sbjct: 456 KRGLLLFIDEADA 468
>At3g03060.1 68416.m00302 AAA-type ATPase family protein contains a
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 639
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +2
Query: 5 TSDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEAN 184
TS K P R +L +GPPG GKT+ A+ +A + ++ + G ++ + ++
Sbjct: 385 TSTANTKLHQAPFRNILLHGPPGTGKTMAARELARKSGLDYALMTGGDVAPLG-AQAVTK 443
Query: 185 VRDIFD-KARSASPCVLFFDELDS 253
+ ++FD +S +LF DE D+
Sbjct: 444 IHELFDWGKKSKRGLLLFIDEADA 467
>At4g24710.1 68417.m03536 AAA-type ATPase family protein similar to
HPV16 E1 protein binding protein [Homo sapiens]
gi|2232019|gb|AAB64095; contains Pfam domain, PF00004:
ATPase, AAA family ('A'TPases 'A'ssociated with diverse
cellular 'A'ctivities)
Length = 467
Score = 43.6 bits (98), Expect = 8e-05
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Frame = +2
Query: 41 SRGVLFYGPPGCGKTLLAKAIANE----CQANF-----ISVKGPELLTMWFGESEANVRD 193
+R +L +GPPG GKT L KA+A + C + + I V L + WF ES V
Sbjct: 202 NRIILLHGPPGTGKTSLCKALAQKLSIRCNSRYPHCQLIEVNAHSLFSKWFSESGKLVAK 261
Query: 194 IFDKARS--ASPCVLFFDELDSTQSRAAA 274
+F K + L F +D +S AAA
Sbjct: 262 LFQKIQEMVEEDGNLVFVLIDEVESLAAA 290
Score = 31.5 bits (68), Expect = 0.37
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +1
Query: 307 VINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLPT 456
V+N +LT+MD + + NV I+ +N ID A + R D Y+ PT
Sbjct: 306 VVNALLTQMDKLKSAPNVIILTTSNITTAIDVAFV--DRADIKAYVGPPT 353
>At5g17730.1 68418.m02079 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 470
Score = 38.7 bits (86), Expect = 0.002
Identities = 18/33 (54%), Positives = 20/33 (60%)
Frame = +2
Query: 11 DKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 109
D + + G RG L YGPPG GKT L AIAN
Sbjct: 235 DFYKRVGKPWKRGYLLYGPPGTGKTSLVAAIAN 267
Score = 32.3 bits (70), Expect = 0.21
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +1
Query: 310 INQILTEMDGMGAK--KNVFIIGATNRPDIIDPAILRPGRLDHLIYI 444
++ +LT +DG+ + +I T + +DPA+LRPGR+D I++
Sbjct: 331 LSGLLTCIDGLWSSCGDERIVIFTTTHKERLDPALLRPGRMDMHIHM 377
>At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1,
Homo sapiens, EMBL:AF026849 h-bcs1, Homo sapiens,
EMBL:AF026849 h-bcs1, Homo sapiens, EMBL:AF026849
contains Pfam profile: ATPase family PF00004
gene_id:K17E7.100 contains Pfam profile: ATPase family
PF00004
Length = 533
Score = 37.9 bits (84), Expect = 0.004
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +2
Query: 2 GTSDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 109
G D + + G RG L YGPPG GK+ L A+AN
Sbjct: 232 GRKDFYKRVGKAWKRGYLLYGPPGTGKSSLVAAMAN 267
Score = 35.5 bits (78), Expect = 0.022
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +1
Query: 310 INQILTEMDGMGAK--KNVFIIGATNRPDIIDPAILRPGRLDHLIYI 444
++ +L +DG+ + II TN + +DPA+LRPGR+D IY+
Sbjct: 336 LSGLLNCIDGLWSSCGNERIIIFTTNNKEKLDPALLRPGRMDMHIYM 382
>At5g17760.1 68418.m02082 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 505
Score = 37.1 bits (82), Expect = 0.007
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +1
Query: 310 INQILTEMDGMGAK--KNVFIIGATNRPDIIDPAILRPGRLDHLIYI 444
++ +L +DG+ + II TN D +DPA+LRPGR+D IY+
Sbjct: 341 LSGLLNFIDGLWSSCGDERIIIFTTNHKDRLDPALLRPGRMDMHIYM 387
Score = 34.7 bits (76), Expect = 0.039
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 17 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 109
+ + G RG L YGPPG GK+ L A+AN
Sbjct: 245 YKRVGKAWKRGYLLYGPPGTGKSSLVAAMAN 275
>At4g05380.1 68417.m00820 AAA-type ATPase family protein contains
similarity to mitochondrial ATPase (AAA family) Bcs1p,
Saccharomyces cerevisiae, Swiss Prot:P32839
Length = 248
Score = 37.1 bits (82), Expect = 0.007
Identities = 18/33 (54%), Positives = 19/33 (57%)
Frame = +2
Query: 11 DKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 109
D F G RG L YGPPG GK+ L AIAN
Sbjct: 21 DFFKTVGRAWKRGYLLYGPPGTGKSSLVAAIAN 53
Score = 33.9 bits (74), Expect = 0.069
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Frame = +1
Query: 310 INQILTEMDGMGAK--KNVFIIGATNRPDIIDPAILRPGRLD-HLI 438
++ +L +DG+ + + II TN + +DPA+LRPGR+D H++
Sbjct: 126 LSGLLNFVDGLWSSCVEERIIIFTTNHKEKLDPALLRPGRMDVHIL 171
>At3g28610.1 68416.m03571 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 473
Score = 37.1 bits (82), Expect = 0.007
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +2
Query: 11 DKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 109
D + K G RG L YGPPG GK+ + A+AN
Sbjct: 226 DYYKKIGKAWKRGYLLYGPPGTGKSTMIAAMAN 258
>At2g37280.1 68415.m04573 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1413
Score = 37.1 bits (82), Expect = 0.007
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 32 MQPSRGVLFYGPPGCGKTLLAKAIANECQAN 124
+ P R L GPPGCGKT L KA++ + N
Sbjct: 162 ISPGRLTLLLGPPGCGKTTLLKALSGNLENN 192
>At1g43910.1 68414.m05066 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 36.7 bits (81), Expect = 0.010
Identities = 17/33 (51%), Positives = 19/33 (57%)
Frame = +2
Query: 11 DKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 109
D F G RG L YGPPG GK+ + AIAN
Sbjct: 229 DFFKSVGRAWKRGYLLYGPPGTGKSSMVAAIAN 261
Score = 34.3 bits (75), Expect = 0.052
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Frame = +1
Query: 310 INQILTEMDGMGAK--KNVFIIGATNRPDIIDPAILRPGRLD-HLI 438
++ +L +DG+ + + II TN + +DPA+LRPGR+D H++
Sbjct: 338 LSGLLNFVDGLWSSCGEEKIIIFTTNHKEKLDPALLRPGRMDVHIL 383
>At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1
nuclear gene encoding mitochondrial protein - Homo
sapiens, EMBL:AF026849 contains Pfam profile: ATPase
family PF00004
Length = 470
Score = 36.3 bits (80), Expect = 0.013
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 17 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVK 139
+ K G RG L YGPPG GK+ + A+AN N ++
Sbjct: 233 YKKIGKAWKRGYLLYGPPGTGKSTMISAMANLLNYNIYDLE 273
>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 530
Score = 36.3 bits (80), Expect = 0.013
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +2
Query: 11 DKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 109
D + K G RG L +GPPG GK+ + AIAN
Sbjct: 233 DYYKKVGKPWKRGYLLFGPPGTGKSTMIAAIAN 265
Score = 30.3 bits (65), Expect = 0.84
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +1
Query: 310 INQILTEMDGM--GAKKNVFIIGATNRPDIIDPAILRPGRLDHLI 438
++ +L +DG+ I+ TN D +DPA++R GR+D+ I
Sbjct: 346 LSGLLNSIDGLWSACSGEKIIVFTTNFVDKLDPALIRRGRMDNHI 390
>At5g40010.1 68418.m04852 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 514
Score = 35.9 bits (79), Expect = 0.017
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 5 TSDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 109
+ D + K G RG L +GPPG GK+ + A+AN
Sbjct: 231 SKDYYKKIGKAWKRGYLLFGPPGTGKSTMIAAMAN 265
Score = 27.5 bits (58), Expect = 5.9
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 364 IIGATNRPDIIDPAILRPGRLD 429
I+ TN D +DPA++R GR+D
Sbjct: 367 IVFTTNFIDKLDPALIRKGRMD 388
>At3g28580.1 68416.m03568 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 500
Score = 35.9 bits (79), Expect = 0.017
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 5 TSDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 109
+ D + K G RG L +GPPG GK+ + A+AN
Sbjct: 228 SKDYYKKIGKAWKRGYLLFGPPGTGKSTMIAAMAN 262
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 364 IIGATNRPDIIDPAILRPGRLD 429
I+ TN D +DPA++R GR+D
Sbjct: 365 IVFTTNFVDKLDPALIRKGRMD 386
>At3g50930.1 68416.m05576 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 576
Score = 35.5 bits (78), Expect = 0.022
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +2
Query: 11 DKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 109
D + + G RG L YGPPG GK+ L A+AN
Sbjct: 289 DFYKRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 321
Score = 30.3 bits (65), Expect = 0.84
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +1
Query: 310 INQILTEMDGMGAK--KNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLPTRS 462
++ +L +DG+ + II TN + +D A+LRPGR+D I++ T S
Sbjct: 390 LSGLLNFIDGLWSSCGDERIIIFTTNYKEKLDAALLRPGRMDMHIHMSYCTPS 442
>At3g28570.1 68416.m03567 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 35.5 bits (78), Expect = 0.022
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 23 KFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 163
+ G RG L YGPPG GK+ + A+AN + N ++ + W
Sbjct: 230 RIGKAWKRGYLLYGPPGTGKSTMIAAMANLMKYNIYDLELTSIGNNW 276
>At3g28540.1 68416.m03564 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 510
Score = 35.5 bits (78), Expect = 0.022
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 11 DKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 109
D + K G RG L +GPPG GK+ + A+AN
Sbjct: 229 DYYRKVGKPWKRGYLLFGPPGTGKSTMISAMAN 261
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +1
Query: 310 INQILTEMDGM--GAKKNVFIIGATNRPDIIDPAILRPGRLDHLI 438
++ +L +DG+ I+ TN D +DPA++R GR+D+ I
Sbjct: 345 LSGLLNAIDGLWSACSGEKIIVFTTNYLDKLDPALIRRGRMDNHI 389
>At4g30250.1 68417.m04301 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 512
Score = 35.1 bits (77), Expect = 0.030
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 17 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 109
+ K G RG L YGPPG GK+ L A+AN
Sbjct: 230 YQKTGRAWKRGYLLYGPPGTGKSSLIAAMAN 260
>At4g14670.1 68417.m02255 heat shock protein 101, putative / HSP101,
putative similar to heat shock protein 101 GI:6715468
GB:AAF26423 from [Arabidopsis thaliana]
Length = 623
Score = 35.1 bits (77), Expect = 0.030
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = +2
Query: 35 QPSRGVLFYGPPGCGKTLLAKAIANE 112
QPS LF GP G GKT LAKA+A +
Sbjct: 562 QPSGSFLFLGPTGVGKTELAKALAEQ 587
>At3g53480.1 68416.m05904 ABC transporter family protein PDR5-like
ABC transporter, Spirodela polyrrhiza, EMBL:Z70524
Length = 1450
Score = 35.1 bits (77), Expect = 0.030
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 32 MQPSRGVLFYGPPGCGKTLLAKAIANECQAN 124
++P R L GPP CGKT L KA++ + N
Sbjct: 197 IKPGRLTLLLGPPSCGKTTLLKALSGNLENN 227
>At3g50940.1 68416.m05577 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 35.1 bits (77), Expect = 0.030
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = +2
Query: 23 KFGMQPSRGVLFYGPPGCGKTLLAKAIAN 109
+ G RG L YGPPG GK+ L AIAN
Sbjct: 241 RVGKAWKRGYLLYGPPGTGKSSLIAAIAN 269
Score = 32.3 bits (70), Expect = 0.21
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +1
Query: 310 INQILTEMDGMGAK--KNVFIIGATNRPDIIDPAILRPGRLDHLIYI 444
++ +L +DG+ + I+ TN + +DPA+LRPGR+D I++
Sbjct: 332 LSGLLNFVDGLWSSCGNERIIVFTTNYREKLDPALLRPGRMDMHIHM 378
>At5g17760.2 68418.m02083 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 341
Score = 34.7 bits (76), Expect = 0.039
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 17 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 109
+ + G RG L YGPPG GK+ L A+AN
Sbjct: 245 YKRVGKAWKRGYLLYGPPGTGKSSLVAAMAN 275
>At4g15230.1 68417.m02333 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, PDR5-like ABC transporter
[Spirodela polyrhiza] GI:1514643; contains Pfam profile
PF00005: ABC transporter
Length = 1326
Score = 34.7 bits (76), Expect = 0.039
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 32 MQPSRGVLFYGPPGCGKTLLAKAIANE 112
++P R L GPPGCGKT L +A++ +
Sbjct: 164 VRPGRMTLLLGPPGCGKTTLLQALSGK 190
>At5g57480.1 68418.m07183 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 520
Score = 34.3 bits (75), Expect = 0.052
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 17 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 109
+ K G RG L YGPPG GK+ + A+AN
Sbjct: 229 YQKTGRAWKRGYLLYGPPGTGKSSMIAAMAN 259
Score = 30.3 bits (65), Expect = 0.84
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Frame = +1
Query: 310 INQILTEMDGMGA---KKNVFIIGATNRPDIIDPAILRPGRLDHLIYI 444
++ +L DG+ + + +F+ TN + +DPA+LR GR+D IY+
Sbjct: 347 LSGLLNFTDGLWSCCGSERIFVF-TTNHIEKLDPALLRSGRMDMHIYM 393
>At5g17750.1 68418.m02081 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 392
Score = 34.3 bits (75), Expect = 0.052
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +1
Query: 364 IIGATNRPDIIDPAILRPGRLDHLIYI 444
+I TN +++DPA+LRPG +D IY+
Sbjct: 328 VIFTTNNKEVLDPALLRPGCMDMHIYL 354
Score = 32.3 bits (70), Expect = 0.21
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 11 DKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 109
D + + G R YGPPG GK+ L A+AN
Sbjct: 210 DYYKRVGKAWKRSYFLYGPPGTGKSSLVAAMAN 242
>At4g15215.1 68417.m02332 ABC transporter family protein similar to
PDR5-like ABC transporter [Spirodela polyrhiza]
GI:1514643; contains Pfam profile PF00005: ABC
transporter
Length = 1390
Score = 34.3 bits (75), Expect = 0.052
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 32 MQPSRGVLFYGPPGCGKTLLAKAIA 106
++P R L GPPGCGKT L +A++
Sbjct: 161 VRPGRMTLLLGPPGCGKTTLLQALS 185
>At3g28520.1 68416.m03562 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 478
Score = 34.3 bits (75), Expect = 0.052
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 11 DKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 109
D + K RG L +GPPG GK+ + AIAN
Sbjct: 218 DYYRKVAKPWKRGYLLFGPPGTGKSTMISAIAN 250
Score = 31.1 bits (67), Expect = 0.48
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +1
Query: 310 INQILTEMDGM--GAKKNVFIIGATNRPDIIDPAILRPGRLDHLI 438
++ +L +DG+ II TN D +DPA++R GR+D+ I
Sbjct: 330 LSGLLNAIDGLWSACSDEKIIIFTTNFVDNLDPALIRRGRMDYHI 374
>At2g18193.1 68415.m02117 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 495
Score = 34.3 bits (75), Expect = 0.052
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 17 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 109
+ + G RG L YGPPG GK+ L A+AN
Sbjct: 235 YKRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 265
Score = 33.1 bits (72), Expect = 0.12
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +1
Query: 310 INQILTEMDGMGAK--KNVFIIGATNRPDIIDPAILRPGRLD 429
++ IL +DG+ + I+ TN + +DPA+LRPGR+D
Sbjct: 328 LSGILNFIDGLWSSFGDERIIVFTTNHKERLDPALLRPGRMD 369
>At2g18190.1 68415.m02116 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 494
Score = 34.3 bits (75), Expect = 0.052
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 17 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 109
+ + G RG L YGPPG GK+ L A+AN
Sbjct: 236 YKRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 266
Score = 32.3 bits (70), Expect = 0.21
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +1
Query: 310 INQILTEMDGMGAK--KNVFIIGATNRPDIIDPAILRPGRLD 429
++ +L +DG+ + I+ TN + +DPA+LRPGR+D
Sbjct: 332 LSGLLNFVDGLWSSFGDERIIVFTTNHKERLDPALLRPGRMD 373
>At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding
subunit / ClpC almost identical to ClpC GI:2921158 from
[Arabidopsis thaliana]; contains Pfam profile PF02861:
Clp amino terminal domain; contains Pfam profile
PF00004: ATPase, AAA family; contains Pfam profile
PF02151: UvrB/uvrC motif
Length = 929
Score = 33.9 bits (74), Expect = 0.069
Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Frame = +2
Query: 29 GMQPSRGVLFYGPPGCGKTLLAKAIANECQANFI--SVKGPELLTM----------WFGE 172
G + G PG GKT +A+ +A + + +++G +++T+ + GE
Sbjct: 291 GRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPETIEGKKVITLDMGLLVAGTKYRGE 350
Query: 173 SEANVRDIFDKARSASPCVLFFDELDSTQSRAAA 274
E ++ + ++ R + +LF DE+ + AA
Sbjct: 351 FEERLKKLMEEIRQSDEIILFIDEVHTLIGAGAA 384
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 20 LKFGMQPSRGVLFYGPPGCGKTLLAKAIA 106
LK +P +F GP G GK+ LAKA+A
Sbjct: 631 LKNPNRPIASFIFSGPTGVGKSELAKALA 659
>At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identical
to heat shock protein 101 GI:6715468 GB:AAF26423 from
[Arabidopsis thaliana]
Length = 911
Score = 33.9 bits (74), Expect = 0.069
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 35 QPSRGVLFYGPPGCGKTLLAKAIANE 112
QP+ LF GP G GKT LAKA+A +
Sbjct: 597 QPTGSFLFLGPTGVGKTELAKALAEQ 622
>At1g21690.2 68414.m02715 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 327
Score = 33.9 bits (74), Expect = 0.069
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +2
Query: 50 VLFYGPPGCGKTLLAKAIANE 112
+LFYGPPG GKT A AIA++
Sbjct: 33 MLFYGPPGTGKTTTALAIAHQ 53
>At1g21690.1 68414.m02714 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 339
Score = 33.9 bits (74), Expect = 0.069
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +2
Query: 50 VLFYGPPGCGKTLLAKAIANE 112
+LFYGPPG GKT A AIA++
Sbjct: 45 MLFYGPPGTGKTTTALAIAHQ 65
>At4g25835.1 68417.m03716 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 506
Score = 33.5 bits (73), Expect = 0.091
Identities = 20/69 (28%), Positives = 37/69 (53%)
Frame = +2
Query: 44 RGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARSASP 223
RG L YGPPG GK+ + A+AN + + ++ E+ +S + +R + K S S
Sbjct: 238 RGYLLYGPPGTGKSSMIAAMANYLRYDIYDLELTEV------KSNSELRKLLMKTSSKS- 290
Query: 224 CVLFFDELD 250
++ +++D
Sbjct: 291 -IIVIEDID 298
Score = 29.1 bits (62), Expect = 1.9
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Frame = +1
Query: 310 INQILTEMDGMGA---KKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPLPTRSPAR 471
++ +L DG+ + + +F+ TN + +DPA+LR GR+D I++ T S +
Sbjct: 338 LSGLLNFTDGLWSCCGSERIFVF-TTNHIEKLDPALLRSGRMDMHIHMSYCTFSSVK 393
>At3g28600.1 68416.m03570 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 33.5 bits (73), Expect = 0.091
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 17 FLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 109
+ K G RG L +GPPG GK+ + A+AN
Sbjct: 228 YKKIGKAWKRGYLLHGPPGTGKSTMIAAMAN 258
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +1
Query: 310 INQILTEMDGMGAK--KNVFIIGATNRPDIIDPAILRPGRLD 429
++ +L +DG+ + + II TN + +DPA++R GR+D
Sbjct: 332 LSGLLNFIDGIWSACGQERIIIFTTNHFEKLDPALIRRGRMD 373
>At4g15236.1 68417.m02335 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1388
Score = 33.1 bits (72), Expect = 0.12
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 32 MQPSRGVLFYGPPGCGKTLLAKAIA 106
++P R L GPPGCGKT L A++
Sbjct: 159 IRPKRMTLLLGPPGCGKTTLLLALS 183
>At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 496
Score = 33.1 bits (72), Expect = 0.12
Identities = 17/57 (29%), Positives = 19/57 (33%)
Frame = +3
Query: 315 PDPHRDGRHGRQEERLHHRCHKQTGHHRPGHPASRPSGPPHLHPAADEKSREAILRA 485
P PH H HH H HH H S P P + P A + RA
Sbjct: 325 PSPHSKHHHHHHHHHHHHHHHHHNHHHHHHHNLS-PKMAPEVSPVASPAPHRSRKRA 380
>At1g06720.1 68414.m00714 expressed protein contains Pfam domain,
PF04950: Protein of unknown function (DUF663)
Length = 1147
Score = 33.1 bits (72), Expect = 0.12
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 26 FGMQPSRGVLFYGPPGCGKTLLAKAIANE-CQANFISVKGP 145
+G P V+ GPPG GK+L+ K++ E + N V+GP
Sbjct: 78 YGEAPPFVVVVQGPPGVGKSLVIKSLVKEFTKQNVPEVRGP 118
>At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding
subunit (ClpC) identical to AtClpC GI:5360574 from
[Arabidopsis thaliana]; contains Pfam profiles PF02861:
Clp amino terminal domain and PF02151: UvrB/uvrC motif
Length = 952
Score = 32.7 bits (71), Expect = 0.16
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 12/83 (14%)
Frame = +2
Query: 62 GPPGCGKTLLAKAIANECQANFI--SVKGPELLTM----------WFGESEANVRDIFDK 205
G PG GKT +A+ +A + + +++G ++T+ + GE E ++ + ++
Sbjct: 323 GEPGVGKTAIAEGLAQRIASGDVPETIEGKTVITLDMGLLVAGTKYRGEFEERLKKLMEE 382
Query: 206 ARSASPCVLFFDELDSTQSRAAA 274
R + +LF DE+ + AA
Sbjct: 383 IRQSDEIILFIDEVHTLIGAGAA 405
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 20 LKFGMQPSRGVLFYGPPGCGKTLLAKAIA 106
LK +P +F GP G GK+ LAKA+A
Sbjct: 652 LKNPNRPIASFIFSGPTGVGKSELAKALA 680
>At1g24290.1 68414.m03065 AAA-type ATPase family protein similar to
Werner helicase interacting protein [Homo sapiens]
GI:14349166; contains Pfam profiles PF00004: ATPase
family associated with various cellular activities
(AAA), PF00627: UBA/TS-N domain; contains
ATP/GTP-binding site motif A (P-loop)
Length = 525
Score = 32.7 bits (71), Expect = 0.16
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 50 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFGESEANVRDIFDKARSA 217
++F+GPPG GKT +AK++ N S K P L + + V+D+ D SA
Sbjct: 140 IVFWGPPGTGKTSIAKSLIN-------SSKDPSLYRFVSLSAVTSGVKDVRDAVESA 189
>At5g67630.1 68418.m08527 DNA helicase, putative similar to
RuvB-like DNA helicase reptin [Danio rerio] GI:27733814,
reptin [Drosophila melanogaster] GI:7243682
Length = 469
Score = 32.3 bits (70), Expect = 0.21
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 14 KFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANE--CQANFISVKGPELLTMWFGESEA 181
+ ++ G R +L G PG GKT +A +A + F + G E+ ++ ++EA
Sbjct: 57 QMIREGKIAGRAILIAGQPGTGKTAIAMGMAKSLGLETPFAMIAGSEIFSLEMSKTEA 114
>At2g46620.1 68415.m05815 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 491
Score = 31.9 bits (69), Expect = 0.28
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 346 AKKNVFIIGATNRPDIIDPAILRPGRLDHLIYIPL 450
A + + + T + I DPA+LRPGR+D I+ PL
Sbjct: 320 ADERIMVFTMTGKEQI-DPAMLRPGRVDVHIHFPL 353
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 23 KFGMQPSRGVLFYGPPGCGKTLLAKAIAN 109
+ G R L YGP G GK+ A+AN
Sbjct: 225 RLGRVWKRSYLLYGPSGTGKSSFVAAMAN 253
>At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding
subunit ClpX, putative similar to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]
Length = 656
Score = 31.9 bits (69), Expect = 0.28
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Frame = +2
Query: 50 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF--GESEANVRDIFDKA----R 211
VL GP G GKTLLAK +A F+ L + + E+ + + A +
Sbjct: 311 VLLMGPTGSGKTLLAKTLARLVNVPFVIADATTLTQAGYVGDDVESILHKLLTVAEFNVQ 370
Query: 212 SASPCVLFFDELDSTQSRA 268
+A +++ DE+D +A
Sbjct: 371 AAQQGIVYIDEVDKITKKA 389
>At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding
subunit ClpX1 (CLPX) identical to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]
Length = 579
Score = 31.5 bits (68), Expect = 0.37
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Frame = +2
Query: 50 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM-WFGESEANV----RDIFD-KAR 211
+L GP G GKTLLAK +A F+ L + GE ++ + D
Sbjct: 226 ILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLTVADYNVA 285
Query: 212 SASPCVLFFDELDSTQSRA 268
+A +++ DE+D +A
Sbjct: 286 AAQQGIVYIDEVDKITKKA 304
>At4g05340.1 68417.m00816 hypothetical protein
Length = 96
Score = 31.1 bits (67), Expect = 0.48
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Frame = +1
Query: 310 INQILTEMDGMGAK--KNVFIIGATNRPDIIDPAILRPGRLD-HLI 438
++ +L +DG+ + + II TN + +DPA LRPG++D H++
Sbjct: 29 LSGLLYFVDGLWSNSVEERIIIFTTNHKEKLDPAFLRPGKMDVHIL 74
>At3g44630.3 68416.m04798 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1240
Score = 31.1 bits (67), Expect = 0.48
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 11 DKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANF 127
++ L+ + R + +GPPG GKT +A+ + N+ F
Sbjct: 279 EQLLRLDLDEVRIIGIWGPPGIGKTTIARFLLNQVSDRF 317
>At3g44630.2 68416.m04800 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1214
Score = 31.1 bits (67), Expect = 0.48
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 11 DKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANF 127
++ L+ + R + +GPPG GKT +A+ + N+ F
Sbjct: 279 EQLLRLDLDEVRIIGIWGPPGIGKTTIARFLLNQVSDRF 317
>At3g44630.1 68416.m04799 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1214
Score = 31.1 bits (67), Expect = 0.48
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 11 DKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANF 127
++ L+ + R + +GPPG GKT +A+ + N+ F
Sbjct: 279 EQLLRLDLDEVRIIGIWGPPGIGKTTIARFLLNQVSDRF 317
>At3g44480.1 68416.m04781 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1194
Score = 31.1 bits (67), Expect = 0.48
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 11 DKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANF 127
++ L+ + R + +GPPG GKT +A+ + N+ F
Sbjct: 283 EQLLRLDLDEVRMIGIWGPPGIGKTTIARFLFNQVSDRF 321
>At3g30842.1 68416.m03968 ABC transporter protein, putative similar
to pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1406
Score = 31.1 bits (67), Expect = 0.48
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 32 MQPSRGVLFYGPPGCGKTLLAKAIANECQANFIS 133
++P R L GPPG GK+ L KA++ + + S
Sbjct: 169 IKPGRLTLLLGPPGSGKSTLLKALSGKTETGLRS 202
>At2g36380.1 68415.m04464 ABC transporter family protein related to
multi drug resistance proteins and P-glycoproteins
Length = 1453
Score = 31.1 bits (67), Expect = 0.48
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 32 MQPSRGVLFYGPPGCGKTLLAKAIANE 112
++PSR L GPP GKT L +A+A +
Sbjct: 196 IKPSRMTLLLGPPSSGKTTLLQALAGK 222
>At1g66950.1 68414.m07612 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1454
Score = 31.1 bits (67), Expect = 0.48
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 32 MQPSRGVLFYGPPGCGKTLLAKAIANE 112
++PSR L GPP GKT L +A+A +
Sbjct: 198 VKPSRMTLLLGPPSSGKTTLLQALAGK 224
>At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1038
Score = 30.7 bits (66), Expect = 0.64
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 11 DKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANF 127
D L + + +GP G GKT +A+A+ N+ NF
Sbjct: 195 DSLLCLNSDEVKMIGIWGPAGIGKTTIARALYNQLSTNF 233
>At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1193
Score = 30.7 bits (66), Expect = 0.64
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 62 GPPGCGKTLLAKAIANECQANF 127
GPPG GKT +A+A+ ++ NF
Sbjct: 221 GPPGIGKTTIARALRDQISENF 242
>At4g15233.1 68417.m02334 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, PDR5-like ABC transporter
[Spirodela polyrhiza] GI:1514643; contains Pfam profile
PF00005: ABC transporter
Length = 1168
Score = 30.7 bits (66), Expect = 0.64
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 32 MQPSRGVLFYGPPGCGKTLLAKAIA 106
++P R L GPP CGKT L A++
Sbjct: 161 IRPKRMTLLLGPPSCGKTTLLLALS 185
>At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding
subunit (ClpD), (ERD1) SAG15/ERD1; identical to ERD1
protein GI:497629, SP:P42762 from [Arabidopsis
thaliana]; contains Pfam profile PF02861: Clp amino
terminal domain
Length = 945
Score = 30.3 bits (65), Expect = 0.84
Identities = 26/75 (34%), Positives = 34/75 (45%)
Frame = +2
Query: 20 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIF 199
LK +P +LF GP G GKT L KA+A AN+ G E + SE R
Sbjct: 650 LKDPDRPIAAMLFCGPTGVGKTELTKALA----ANYF---GSEESMLRLDMSEYMERHTV 702
Query: 200 DKARSASPCVLFFDE 244
K + P + F+E
Sbjct: 703 SKLIGSPPGYVGFEE 717
>At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP100,
putative / heat shock protein clpB, putative /
HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
[Phaseolus lunatus]
Length = 968
Score = 30.3 bits (65), Expect = 0.84
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 35 QPSRGVLFYGPPGCGKTLLAKAIAN 109
+P +F GP G GKT LAKA+A+
Sbjct: 676 RPIASFMFMGPTGVGKTELAKALAS 700
>At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1095
Score = 30.3 bits (65), Expect = 0.84
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 35 QPSRGVLFYGPPGCGKTLLAKAIANECQANF 127
Q R V +GP G GKT +A+A+ N+ NF
Sbjct: 203 QGVRIVGIWGPAGVGKTTIARALYNQYHENF 233
>At2g26910.1 68415.m03228 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1420
Score = 30.3 bits (65), Expect = 0.84
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 32 MQPSRGVLFYGPPGCGKTLLAKAIANECQAN 124
++PSR L GPP GKT L A+A N
Sbjct: 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGTN 188
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 30.3 bits (65), Expect = 0.84
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 8 SDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANE 112
S + + + R VL YGP G GK+ L + +A+E
Sbjct: 342 SFEMVSLAVSQKRPVLLYGPSGSGKSALIRKLADE 376
>At5g45200.1 68418.m05548 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1261
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 62 GPPGCGKTLLAKAIANECQANFI 130
G PG GKT LAK + +EC +F+
Sbjct: 244 GMPGIGKTTLAKRLFSECGKHFL 266
>At5g40910.1 68418.m04967 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Non-consensus TT donor splice site at exon 1
Length = 1104
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 11 DKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANF 127
D FL + + +GP G GKT +A+A+ N+ F
Sbjct: 196 DSFLCLESDDVKMIGIWGPAGIGKTTIARALFNQLSTGF 234
>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
resistance protein-related low similarity to disease
resistance protein RPP4 [Arabidopsis thaliana]
GI:20270890; contains Pfam profiles PF00412: LIM domain,
PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1613
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 44 RGVLFYGPPGCGKTLLAKAIANECQANF 127
R + +G PG GKT LAKA+ N ++
Sbjct: 190 RSIGIWGMPGIGKTTLAKAVFNHMSTDY 217
>At3g16340.1 68416.m02066 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]; contains Pfam profile: PF00005 ABC
transporter
Length = 1416
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 32 MQPSRGVLFYGPPGCGKTLLAKAIANE 112
++PSR L GPP GKT L A+A +
Sbjct: 170 IKPSRMTLLLGPPSSGKTTLLLALAGK 196
>At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP100,
putative / heat shock protein clpB, putative /
HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
[Phaseolus lunatus]
Length = 964
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 35 QPSRGVLFYGPPGCGKTLLAKAIA 106
+P +F GP G GKT LAKA+A
Sbjct: 681 RPIASFMFMGPTGVGKTELAKALA 704
>At1g15210.1 68414.m01818 ABC transporter family protein Similar to
gb|Z70524 GI:1514643 PDR5-like ABC transporter from
Spirodela polyrrhiza and is a member of the PF|00005 ABC
transporter family. ESTs gb|N97039 and gb|T43169 come
from this gene
Length = 1442
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 32 MQPSRGVLFYGPPGCGKTLLAKAIANE 112
++PSR L GPP GKT L A+A +
Sbjct: 192 VKPSRMTLLLGPPSSGKTTLLLALAGK 218
>At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding
subunit ClpX, putative similar to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]; non-consensus splice donor GC at exon 4;
non-consensus splice donor AA at exon 7
Length = 606
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +2
Query: 50 VLFYGPPGCGKTLLAKAIA 106
VL GP G GKTLLAK +A
Sbjct: 265 VLLLGPTGSGKTLLAKTLA 283
>At5g47040.1 68418.m05797 Lon protease homolog 1, mitochondrial
(LON) identical to Lon protease homolog 1 mitochondrial
precursor SP:O64948 from [Arabidopsis thaliana]
Length = 888
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 56 FYGPPGCGKTLLAKAIANECQANFI 130
F GPPG GKT LA +IA F+
Sbjct: 406 FVGPPGVGKTSLASSIAAALGRKFV 430
>At5g27950.1 68418.m03366 kinesin motor protein-related kinesin
heavy chain-like protein, potato, PIR:T07397
Length = 625
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = -2
Query: 109 VGDGLCQQSFTTTRRSVEENTARRLHAELQE 17
VG+ +C SFT R+VE N R L AELQ+
Sbjct: 388 VGETICSLSFTKRARAVESN--RGLTAELQK 416
>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1189
Score = 29.5 bits (63), Expect = 1.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 59 YGPPGCGKTLLAKAIANECQANF 127
+GPPG GKT +A+ + N+ +F
Sbjct: 263 WGPPGIGKTTIARVVYNQLSHSF 285
>At5g63400.1 68418.m07958 adenylate kinase identical to adenylate
kinase (ATP-AMP transphosphorylase) [Arabidopsis
thaliana] SWISS-PROT:O82514
Length = 246
Score = 29.1 bits (62), Expect = 1.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 20 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANE 112
LK +P + ++F GPPG GK + + +E
Sbjct: 26 LKCSQKPDKRLIFIGPPGSGKGTQSPVVKDE 56
>At5g18360.1 68418.m02160 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 900
Score = 29.1 bits (62), Expect = 1.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 59 YGPPGCGKTLLAKAIANECQANF 127
+GP G GKT +A+A+ N NF
Sbjct: 213 WGPAGIGKTTIARALFNRLSENF 235
>At4g13750.1 68417.m02134 expressed protein
Length = 2137
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 95 KAIANECQANFISVKGPELLTMWFG-ESEANVRDIFDKARSASPCVLF 235
K ++ + A ++ + P + G +SE N +I K +S+S CVLF
Sbjct: 167 KVLSRQTLARLVAEQFPSISFKVVGRDSEENFSEIIGKKKSSSKCVLF 214
>At3g25510.1 68416.m03172 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1981
Score = 29.1 bits (62), Expect = 1.9
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 20 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANF 127
L+ + R + +GPPG GKT +A+ + ++ +F
Sbjct: 216 LRLDLDDVRMIGIWGPPGIGKTTIARFLLSQVSKSF 251
>At2g29940.1 68415.m03642 ABC transporter family protein similar to
ABC1 protein GI:14331118 from [Nicotiana
plumbaginifolia]
Length = 1426
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 32 MQPSRGVLFYGPPGCGKTLLAKAIANE 112
++P R L GPPG GK+ L A+A +
Sbjct: 183 IKPGRMTLLLGPPGSGKSTLLLALAGK 209
>At5g45050.2 68418.m05524 disease resistance protein-related similar
to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
profiles PF03106: WRKY DNA -binding domain, PF00931:
NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1344
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 44 RGVLFYGPPGCGKTLLAKAIANECQANF 127
R V +G PG GKT LAKA+ ++ F
Sbjct: 164 RCVGIWGMPGIGKTTLAKAVFDQMSGEF 191
>At5g45050.1 68418.m05523 disease resistance protein-related similar
to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
profiles PF03106: WRKY DNA -binding domain, PF00931:
NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1372
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 44 RGVLFYGPPGCGKTLLAKAIANECQANF 127
R V +G PG GKT LAKA+ ++ F
Sbjct: 164 RCVGIWGMPGIGKTTLAKAVFDQMSGEF 191
>At5g36930.1 68418.m04427 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1188
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 20 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANE 112
L G R ++ YG G GKT LAK NE
Sbjct: 202 LSIGSDGVRVIVIYGMGGIGKTTLAKVAFNE 232
>At5g22330.1 68418.m02605 TATA box-binding protein-interacting
protein-related similar to TATA box-binding
protein-interacting protein SP:O35753 from [ Mus
musculus]
Length = 458
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 44 RGVLFYGPPGCGKTLLAKAIANE 112
+ +L GPPG GKT LA I+ E
Sbjct: 67 KALLLAGPPGTGKTALALGISQE 89
>At4g26090.1 68417.m03756 disease resistance protein RPS2
(CC-NBS-LRR class), putative domain signature CC-NBS-LRR
exists, suggestive of a disease resistance protein.
identical to RPS2 (gi:13661831)
Length = 909
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 35 QPSRGVL-FYGPPGCGKTLLAKAIANE 112
+ RG++ YGP G GKT L ++I NE
Sbjct: 172 EEERGIIGVYGPGGVGKTTLMQSINNE 198
>At4g24610.1 68417.m03525 expressed protein
Length = 1145
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 378 KQTGHHRPGHPASRPSGPPHLHPA 449
++TGH AS SGPP HPA
Sbjct: 183 RKTGHFTRPSAASESSGPPDQHPA 206
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Frame = +3
Query: 324 HRDGRHGRQ----EERLHHRCHKQTGHHRPGHPASRPSGPPH 437
H RHGR +R HHR H HH GH R G H
Sbjct: 104 HGHRRHGRDHRHGRDRGHHRGHGH--HHHRGHRRGRGRGHGH 143
>At2g14080.1 68415.m01566 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1215
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 44 RGVLFYGPPGCGKTLLAKAIANECQANF-ISVKGPELLTM 160
R + +GPPG GKT + + + N+ ++F +S+ + TM
Sbjct: 252 RMIGIWGPPGIGKTTIVRFLYNQLSSSFELSIFMENIKTM 291
>At1g01370.1 68414.m00052 centromeric histone H3 HTR12 (HTR12)
similar to histone H3 GB:X17141 GI:10795 from
Tetrahymena pyriformis, GI:161790 from Tetrahymena
thermophila; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 178
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 383 DRTSSTRPSCVPAVWTTSSTSRCRREVPRG 472
D T T P+ PA T R R+ +PRG
Sbjct: 43 DNTQQTNPTTSPATGTRRGAKRSRQAMPRG 72
>At5g64840.1 68418.m08157 ABC transporter family protein
Length = 692
Score = 28.3 bits (60), Expect = 3.4
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Frame = +2
Query: 2 GTSDKFL--KFGMQPSRG--VLFYGPPGCGKTLLAKAIAN-ECQANFISVKGP-ELLTMW 163
G DK L K + RG + GP GCGK+ L K I E + G +L +
Sbjct: 433 GFEDKMLFKKANLSIERGEKIAILGPNGCGKSTLLKLIMGLEKPVKGEVILGEHNVLPNY 492
Query: 164 FGESEANVRDIFDKARSASPC 226
F +++A V D+ DK + C
Sbjct: 493 FEQNQAEVLDL-DKTVLETVC 512
>At5g45260.1 68418.m05555 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1187
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 44 RGVLFYGPPGCGKTLLAKAIANECQANF 127
R V +G PG GKT LAKA+ ++ + F
Sbjct: 173 RCVGIWGMPGIGKTTLAKAVFDQMSSAF 200
>At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 896
Score = 28.3 bits (60), Expect = 3.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 59 YGPPGCGKTLLAKAIANECQANF 127
+GPPG GKT +A+++ N+ F
Sbjct: 264 WGPPGVGKTTIARSLYNQHSDKF 286
>At1g59870.1 68414.m06745 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1469
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 32 MQPSRGVLFYGPPGCGKTLLAKAIANE 112
++P R L GPP GKT L A+A +
Sbjct: 194 IKPGRMTLLLGPPSSGKTTLLLALAGK 220
>At1g27180.1 68414.m03311 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1556
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +2
Query: 26 FGMQPSRGVL---FYGPPGCGKTLLAKAIANECQANF 127
F + S G+ YG G GKT LAKA N+ NF
Sbjct: 376 FNTESSSGIQVMGLYGMGGIGKTTLAKAFYNKIIVNF 412
>At1g27170.1 68414.m03310 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1544
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +2
Query: 59 YGPPGCGKTLLAKAIANECQANF 127
YG G GKT LAKA N+ NF
Sbjct: 377 YGMGGIGKTTLAKAFYNKIVGNF 399
>At1g15520.1 68414.m01867 ABC transporter family protein similar to
ABC1 protein GI:14331118 from [Nicotiana
plumbaginifolia]
Length = 1423
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 32 MQPSRGVLFYGPPGCGKTLLAKAIANE 112
++P R L GPP GKT L A+A +
Sbjct: 177 VKPGRMALLLGPPSSGKTTLLLALAGK 203
>At5g66910.1 68418.m08434 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 815
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 50 VLFYGPPGCGKTLLAKAIANE 112
V+ GPPGCGKT L + ++
Sbjct: 192 VVVSGPPGCGKTTLVTKLCDD 212
>At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1046
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 59 YGPPGCGKTLLAKAIANECQANF 127
YGP G GKT +A+A+ + ++F
Sbjct: 216 YGPAGIGKTTIARALHSRLSSSF 238
>At5g50370.1 68418.m06238 adenylate kinase, putative similar to
adenylate kinase (ATP-AMP transphosphorylase)
[Arabidopsis thaliana] SWISS-PROT:O82514
Length = 248
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 20 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANE 112
+K +P + ++F GPPG GK + I +E
Sbjct: 27 MKCASKPDKRLVFIGPPGSGKGTQSPVIKDE 57
>At3g54220.1 68416.m05993 scarecrow transcription factor, putative
nearly identical to SCARECROW [Arabidopsis thaliana]
GI:1497987
Length = 653
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +3
Query: 411 ASRPSGPPHLHPAADEKSREAILRANLRKSTIARTL 518
ASRP GPPH+ S EA+ R S A L
Sbjct: 422 ASRPGGPPHVRLTGLGTSMEALQATGKRLSDFADKL 457
>At2g38770.1 68415.m04760 expressed protein
Length = 1509
Score = 27.9 bits (59), Expect = 4.5
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +2
Query: 29 GMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDK 205
G+QP + GPPG GKT A I N N P T+ S + D+F+K
Sbjct: 877 GIQPGL-TMVVGPPGTGKTDTAVQILNVLYHNC-----PSQRTLIITHSNQALNDLFEK 929
>At1g77470.1 68414.m09021 replication factor C 36 kDA, putative
similar to SWISS-PROT:P40937 activator 1 36 kDa subunit
(Replication factor C 36 kDa subunit, A1 36 kDa subunit,
RF-C 36 kDa subunit, RFC36) [Homo sapiens]
Length = 369
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 50 VLFYGPPGCGKTLLAKAIANE 112
+L YGPPG GKT A+A +
Sbjct: 75 LLLYGPPGTGKTSTILAVARK 95
>At1g73170.1 68414.m08466 expressed protein
Length = 666
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 8 SDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIA 106
S L+ +Q +L GPPG GKT + + +A
Sbjct: 186 SANLLRDLVQDGNSLLLIGPPGVGKTTMIREVA 218
>At1g18150.2 68414.m02253 mitogen-activated protein kinase, putative
/ MAPK, putative (MPK8) identical to ATMPK8 [Arabidopsis
thaliana] gi|7106542|dbj|BAA92222; mitogen-activated
protein kinase (MAPK), PMID:12119167; similar to
mitogen-activated protein kinase GI:5815410 from (Oryza
sativa)
Length = 589
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 249 SSSSKNNTHGDADRALSKMSRTFASDSPNHMVSS 148
SSSS NN + + ++ + S +S +PNH +S
Sbjct: 24 SSSSSNNNNNNHEQPIFNSSSFSSSSNPNHSANS 57
>At1g18150.1 68414.m02252 mitogen-activated protein kinase, putative
/ MAPK, putative (MPK8) identical to ATMPK8 [Arabidopsis
thaliana] gi|7106542|dbj|BAA92222; mitogen-activated
protein kinase (MAPK), PMID:12119167; similar to
mitogen-activated protein kinase GI:5815410 from (Oryza
sativa)
Length = 589
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 249 SSSSKNNTHGDADRALSKMSRTFASDSPNHMVSS 148
SSSS NN + + ++ + S +S +PNH +S
Sbjct: 24 SSSSSNNNNNNHEQPIFNSSSFSSSSNPNHSANS 57
>At4g19500.1 68417.m02868 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein. A false
intron was added between exons 2 and 3 to circumvent a
frameshift caused by a sequencing error, as per Blake
Meyers (bcmeyers@vegmail.ucdavis.edu)
Length = 1308
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 20 LKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANF 127
L+ + +R V GP G GKT +AKA+ ++ F
Sbjct: 197 LRLKSEKARMVGISGPSGIGKTTIAKALFSKLSPQF 232
>At4g16490.1 68417.m02496 armadillo/beta-catenin repeat family
protein contains Pfam profile: PF00514
armadillo/beta-catenin-like repeat
Length = 268
Score = 27.5 bits (58), Expect = 5.9
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 102 SPTSVRLTLYQ*RDQSCSPCGSASPRRTYAT 194
S +VR YQ DQSCS GS + YA+
Sbjct: 40 SMRTVRSNFYQSGDQSCSFVGSIGDKSEYAS 70
>At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1234
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 44 RGVLFYGPPGCGKTLLAKAIANECQANF 127
R V +GP G GKT +A+A+ N +F
Sbjct: 203 RMVGIWGPTGIGKTTIARALFNRIYRHF 230
>At3g54920.1 68416.m06086 pectate lyase, putative / powdery mildew
susceptibility protein (PMR6) identical to powdery
mildew susceptibility protein [Arabidopsis thaliana]
GI:22506901; similar to pectate lyase 2 GP:6606534 from
[Musa acuminata]
Length = 501
Score = 27.5 bits (58), Expect = 5.9
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Frame = +3
Query: 33 CSLRAVFSSTDLLVVVKLCWQRPSPTSVRLTLYQ------*RDQSCSPCGSASPRRTYAT 194
C + S+T L + L Q PSP SV L + + R Q SP S+S + ++
Sbjct: 14 CLFFTLLSATKPLNLT-LPHQHPSPDSVALHVIRSVNESLARRQLSSPSSSSSSSSSSSS 72
Query: 195 SSTRLDRHLRAC--CSSTSWTPRK 260
SS R + C CS W+ +
Sbjct: 73 SSCRTGNPIDDCWRCSDADWSTNR 96
>At3g05780.1 68416.m00649 Lon protease, putative similar to Lon
protease homolog 2 SP:P93655
Length = 924
Score = 27.5 bits (58), Expect = 5.9
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Frame = +2
Query: 29 GMQPSRGVLFYGPPGCGKTLLAKAIANECQANF--ISVKG----PEL---LTMWFGESEA 181
G + + GPPG GKT + ++IA F SV G E+ + G
Sbjct: 436 GTSQGKIICLSGPPGVGKTSIGRSIARALDRKFFRFSVGGLSDVAEIKGHCQTYVGAMPG 495
Query: 182 NVRDIFDKARSASPCVLFFDELD 250
+ +A+P +L FDE+D
Sbjct: 496 KMVQCLKSVGTANPLIL-FDEID 517
>At1g26170.1 68414.m03194 importin beta-2 subunit family protein
similar to Importin9 isoform 1 [Mus musculus]
GI:15186756; contains Pfam profile PF03810:
Importin-beta N-terminal domain
Length = 931
Score = 27.5 bits (58), Expect = 5.9
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 104 ANECQANFISVKGPELLTMWFGESEANVRDIFD 202
A EC A FIS ELLT W G+ +R + D
Sbjct: 623 ATECLAAFISSGRQELLT-WSGDPGFTMRSLLD 654
>At5g41550.1 68418.m05049 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1085
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 59 YGPPGCGKTLLAKAIANECQANF 127
+GP G GK+ +A+A+ N+ ++F
Sbjct: 213 WGPAGIGKSTIARALYNQLSSSF 235
>At5g32775.1 68418.m03902 hypothetical protein
Length = 240
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/58 (27%), Positives = 23/58 (39%)
Frame = +3
Query: 357 RLHHRCHKQTGHHRPGHPASRPSGPPHLHPAADEKSREAILRANLRKSTIARTLTCLT 530
R H GHH P PHLH +S + +R+++ S I L +T
Sbjct: 48 RDHSTPWSSRGHHHFTSPLDHEVECPHLHHQTITRSHHSTMRSSVFTSIIRPPLDLVT 105
>At5g32590.1 68418.m03867 myosin heavy chain-related similar to
Myosin heavy chain, non-muscle (Zipper protein) (Myosin
II)(SP:Q99323) {Drosophila melanogaster}
Length = 761
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 309 HQPDPHRDGRHGRQEERLHHRCHKQTGHHRPGHPASR 419
++P PHR+G G RL HR +++ H PASR
Sbjct: 322 YRPTPHREGHSG----RLSHR--ERSPHRDSPRPASR 352
>At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial
almost identical to Lon protease homolog 2
mitochondrial precursor SP:P93655, GI:1848290 from
[Arabidopsis thaliana]
Length = 940
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 29 GMQPSRGVLFYGPPGCGKTLLAKAIANECQANF 127
G + + GPPG GKT + ++IA F
Sbjct: 453 GTSQGKIICLSGPPGVGKTSIGRSIARALNRKF 485
>At5g09930.1 68418.m01148 ABC transporter family protein
Length = 678
Score = 27.1 bits (57), Expect = 7.9
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Frame = +2
Query: 2 GTSDKFL--KFGMQPSRG--VLFYGPPGCGKTLLAKAI--ANECQANFISVKGPELLTMW 163
G DK L K + RG V GP GCGK+ L K I + + + +L +
Sbjct: 419 GFDDKMLFNKANLAIERGEKVAIIGPNGCGKSTLLKLIMGLEKPMRGEVILGEHNVLPNY 478
Query: 164 FGESEANVRDI 196
F +++A +D+
Sbjct: 479 FEQNQAEAQDL 489
>At3g51560.1 68416.m05646 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1253
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 44 RGVLFYGPPGCGKTLLAKAIANECQANF 127
R + +G PG GKT LAKA ++ ++
Sbjct: 181 RSIGIWGMPGIGKTTLAKAAFDQLSGDY 208
>At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam
profile: ATPase family PF00004
Length = 440
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 11 DKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIA 106
D + + G R L +G PG GKT L AIA
Sbjct: 189 DFYKRVGRHWMRYYLLHGLPGAGKTSLVAAIA 220
>At3g04210.1 68416.m00445 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 531
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 11 DKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANF 127
++ L + R + +GPPG GKT +A+ + + +F
Sbjct: 251 ERMLYLDLNDVRMIGIWGPPGIGKTSIARVLFRKHSDSF 289
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +3
Query: 363 HHRCHKQTGHHRPGHPASRPSGPP 434
H R HK HH PA P PP
Sbjct: 175 HKRKHKHKRHHHAPAPAPIPPSPP 198
>At1g53390.1 68414.m06052 ABC transporter family protein similar to
ATP-binding cassette, sub-family G, member 2
(Placenta-specific ATP- binding cassette transporter)
(Breast cancer resistance protein) SP:Q9UNQ0 from [Homo
sapiens]
Length = 1092
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 32 MQPSRGVLFYGPPGCGKTLLAKAIANE 112
M+P R GP G GKT L A+A +
Sbjct: 514 MKPGRITAVMGPSGAGKTSLLSALAGK 540
>At1g04730.1 68414.m00469 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 954
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = +2
Query: 50 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE-ANVRDIFDKARSASPC 226
+L G PG GKT LA A C + + + + E+ +V + + P
Sbjct: 348 LLLCGAPGLGKTTLAHIAAKHCGYRVVEINASDERSASAIETRILDVVQMNSVTADSRPK 407
Query: 227 VLFFDELD 250
L DE+D
Sbjct: 408 CLVIDEID 415
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,873,552
Number of Sequences: 28952
Number of extensions: 249115
Number of successful extensions: 1520
Number of sequences better than 10.0: 176
Number of HSP's better than 10.0 without gapping: 1325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1507
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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