Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20442
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             109   3e-24
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           99   4e-21
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   1e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 86   2e-17
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     35   0.053
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.28 
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               32   0.38 
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.38 
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   2.0  
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.6  
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              29   4.6  
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_36581| Best HMM Match : HR1 (HMM E-Value=2.2)                       28   8.1  

>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  109 bits (261), Expect = 3e-24
 Identities = 51/95 (53%), Positives = 67/95 (70%), Gaps = 2/95 (2%)
 Frame = +2

Query: 269 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 448
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 449 TREHALLAFTLGVKQLIVGVTK--WIPLNHHTVSP 547
           TREHA+L  +LGV QLIV + K   + L +H   P
Sbjct: 61  TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 42/86 (48%), Positives = 61/86 (70%)
 Frame = +2

Query: 257 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 436
           +G T+++    F+T   + T++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  
Sbjct: 206 KGNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFE 265

Query: 437 KNGQTREHALLAFTLGVKQLIVGVTK 514
           + GQTREHA+LA T GVK L++ V K
Sbjct: 266 RGGQTREHAMLAKTAGVKHLVILVNK 291



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 17/39 (43%), Positives = 27/39 (69%)
 Frame = +3

Query: 138 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 254
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEER 204



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 15/33 (45%), Positives = 25/33 (75%)
 Frame = +1

Query: 508 NKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 606
           NKMD     ++E R+EEIK +++ ++KK+G+NP
Sbjct: 290 NKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +3

Query: 54  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 200
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 38/40 (95%), Positives = 39/40 (97%)
 Frame = +2

Query: 257 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 376
           RGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 21  RGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +3

Query: 198 MGKGSFKYAWVLDKLKAER 254
           MGKGSFKYAWVLDKLKAER
Sbjct: 1   MGKGSFKYAWVLDKLKAER 19


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 35.1 bits (77), Expect = 0.053
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = +2

Query: 257 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 415
           RGI++  ++  F      + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 63  RGISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 311 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 415
           +T ID PGH  F      G +  D  VL+VAA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +2

Query: 260 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 406
           GIT  I  +  +     +  +D PGH  F      G    D  +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +3

Query: 54  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 149
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43



 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 305 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 415
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 317 IIDAPGHRDFIKNMITGTSQADCAVLIV 400
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 69  THINIVVIGHVDSGKSTTTGHLIY 140
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4072

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = -3

Query: 484  TEGESEQGMLTGLTVLRDTSFEFTGTGSYDEHSAISLRGSCDH--VLDEISVSRSINDGN 311
            T G SE  +  G TVL +++    GT    E +A  L        V  E S+S   ++  
Sbjct: 1469 TTGASESTVAPGTTVLPESTVT-PGTTVSSESTATPLTNLASESTVTLETSISSEASEST 1527

Query: 310  IVLASFELPESNIDCDTTLRS 248
            +   +   PES +  +TT+ S
Sbjct: 1528 VASGTTLAPESTVAPETTVAS 1548


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 78   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 176
            N  ++ HVD GKST    L+   G I K +  K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = +2

Query: 320 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 499
           +D PGH   +  M+ G +  D A+L++A              QT EH      + +K ++
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122

Query: 500 V 502
           +
Sbjct: 123 I 123


>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +1

Query: 520  STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 660
            ST    S+  FE  KK      +S+ K    +P+  + FVP   WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113


>SB_36581| Best HMM Match : HR1 (HMM E-Value=2.2)
          Length = 760

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -1

Query: 264 IPRYAQPLVCPIPKHI*RILYPFPGPPSRTSRWYVC 157
           +P Y  P  CPIP  +   LYP P P       Y C
Sbjct: 496 VPEYLYP--CPIPYGVPEYLYPCPIPYGVPEYLYPC 529



 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -1

Query: 264 IPRYAQPLVCPIPKHI*RILYPFPGPPSRTSRWYVC 157
           +P Y  P  CPIP  +   LYP P P       Y C
Sbjct: 522 VPEYLYP--CPIPYDVPEYLYPRPIPYDVPEYLYPC 555


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,621,431
Number of Sequences: 59808
Number of extensions: 452995
Number of successful extensions: 1345
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1343
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)