Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20440
         (444 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   4.6  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   6.1  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   6.1  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    21   6.1  

>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 141 GMCKAGFAGD 170
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 366 STMSCVSPPRNTP 404
           S ++C  PPR TP
Sbjct: 388 SCVACSPPPRQTP 400


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +2

Query: 206 KAPPSGRDGRYGTEGLYVGDEAQSKRGILTLKYPIEHGIVTNWDD 340
           K  P G  G  G + +    E   KRG++  +  ++    T +DD
Sbjct: 180 KRAPMGFYGTRGKKIILDALEELDKRGVMDFQIGLQRKKDTTFDD 224


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +2

Query: 206 KAPPSGRDGRYGTEGLYVGDEAQSKRGILTLKYPIEHGIVTNWDD 340
           K  P G  G  G + +    E   KRG++  +  ++    T +DD
Sbjct: 180 KRAPMGFYGTRGKKIILDALEELDKRGVMDFQIGLQRKKDTTFDD 224


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,096
Number of Sequences: 438
Number of extensions: 2957
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)