Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20439
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 40 3e-04
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 33 0.019
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 30 0.18
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 30 0.18
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 30 0.24
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.24
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 29 0.31
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 29 0.55
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 28 0.72
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 28 0.72
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 28 0.95
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos... 27 1.3
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 27 1.3
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 26 2.9
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 26 2.9
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 26 2.9
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 26 3.8
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom... 26 3.8
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 26 3.8
SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr... 25 5.1
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 25 5.1
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 25 8.9
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar... 25 8.9
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 25 8.9
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 39.5 bits (88), Expect = 3e-04
Identities = 20/38 (52%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Frame = +2
Query: 239 TKSPR-FAFIEFENLQEAEDACSAMNGTEMLGATLKVE 349
+KSP FAFI FEN A++A +++NG+ G TLKVE
Sbjct: 62 SKSPTLFAFITFENKCSADNAIASLNGSSFQGNTLKVE 99
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 33.5 bits (73), Expect = 0.019
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 144 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 230
R+YVGGL I+ DLE F ++G ++++
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNL 34
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 30.3 bits (65), Expect = 0.18
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 221 KLSLGSTKSPR-FAFIEFENLQEAEDACSAMNGTEMLGATLKV 346
++ LG+T R AF+ +EN+Q+A AC ++G + L V
Sbjct: 40 QIRLGNTVQTRGTAFVVYENVQDARRACEKLSGYNFMDRYLVV 82
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 30.3 bits (65), Expect = 0.18
Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
Frame = +2
Query: 239 TKSPR-FAFIEFENLQEAEDACSAMNG--TEMLGATLKVEISRK 361
T++ R FAF+E+E+ ++AEDA ++G E G L+VE +++
Sbjct: 43 TRTSRPFAFVEYEDSRDAEDAYYEVHGRRLERGGGVLRVEWAKQ 86
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 29.9 bits (64), Expect = 0.24
Identities = 12/32 (37%), Positives = 23/32 (71%)
Frame = +2
Query: 254 FAFIEFENLQEAEDACSAMNGTEMLGATLKVE 349
FAF+ ++ + AE+A +++NGTE+ G + V+
Sbjct: 150 FAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVD 181
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.9 bits (64), Expect = 0.24
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -3
Query: 235 TQTEFSFPYLSNSRSRSSFLIPSTRPPTYTRVPPE 131
T+ +FPYL NSR+R S + P+ VPPE
Sbjct: 329 TEYRIAFPYLYNSRAR-SVALSEYHQPSNVFVPPE 362
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 29.5 bits (63), Expect = 0.31
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2
Query: 233 GSTKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 361
G S F F+EF++ A A AMNG + G L++++S +
Sbjct: 660 GKYLSMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQ 702
Score = 28.7 bits (61), Expect = 0.55
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Frame = +2
Query: 218 TKLSLGSTK---SPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 358
T +S+ TK S RFAFI F+N ++A+ A +N + + T ++E+ R
Sbjct: 33 TDVSVAKTKEGVSRRFAFIGFKNEEDADKAIRYLNKSYV--ETSRIEVHR 80
Score = 28.3 bits (60), Expect = 0.72
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 254 FAFIEFENLQEAEDACSAMNGTEMLGATLKVE 349
FAF EF +EA +A A+ T +LG L ++
Sbjct: 763 FAFAEFVTAREAANAMRALKNTHLLGRHLVLQ 794
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 28.7 bits (61), Expect = 0.55
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 233 GSTKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 355
GS+K F F EF+N +AE A S ++G + G L + +
Sbjct: 348 GSSKG--FCFCEFKNPSDAEVAISGLDGKDTYGNKLHAQFA 386
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 28.3 bits (60), Expect = 0.72
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +3
Query: 147 VYVGGLVEGIKKEDLEREFDKYGKLNSVW 233
+YVG + + E++ + F KYG++ S++
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESIF 47
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 28.3 bits (60), Expect = 0.72
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 123 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV 230
+M T V+VGGL + ++DL+ F +G++ ++
Sbjct: 291 SMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNI 326
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 27.9 bits (59), Expect = 0.95
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 254 FAFIEFENLQEAEDACSAMNGTEMLGATLKV 346
F F EF + Q+ E AC +N ++ G ++V
Sbjct: 54 FGFCEFLHEQDVEYACQILNQVKLFGKPIRV 84
>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 584
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -3
Query: 298 RIFRLLQVLKFYESEPGGFSATQTEFSF 215
R F+LL + F E E G SA+QT+F+F
Sbjct: 70 RYFKLLCSIGFKEIEVGFPSASQTDFAF 97
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 147 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN 245
+++ L K+ D+EREF +YG + + V N
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRN 134
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 26.2 bits (55), Expect = 2.9
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 257 AFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 358
AF+ F+NL+ A A + G + G + ++ S+
Sbjct: 71 AFVVFDNLENASRALKDLQGYPLYGKPMMIQYSK 104
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 26.2 bits (55), Expect = 2.9
Identities = 8/34 (23%), Positives = 19/34 (55%)
Frame = +3
Query: 129 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV 230
++ V++G L ++++E F K+GK+ +
Sbjct: 295 TAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHI 328
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 241 SATQTEFSFPYLSNSRSRSSFLIPSTRPPTYTRVP 137
S+ + +S P SNS + S+ +I S +YT +P
Sbjct: 803 SSMNSSYSSPISSNSVTSSTSIISSIASSSYTSIP 837
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 25.8 bits (54), Expect = 3.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 245 SPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 352
S +AFIEFE+L A M+ + G L+ ++
Sbjct: 145 SKHYAFIEFESLDVANVVAETMHNYLLYGKLLQCKV 180
>SPCC1223.08c |dfr1||dihydrofolate reductase
Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 3.8
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 180 KEDLEREFDKYGKLNSVWVAL 242
KE++E EF+ YGK + V VAL
Sbjct: 435 KEEVEIEFELYGKNDDVNVAL 455
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 25.8 bits (54), Expect = 3.8
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 209 IWKTKLSLGSTKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 349
I + KL + F F+ F N ++ A MNG ++ TL V+
Sbjct: 245 IRRIKLRGEQRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVK 291
>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 25.4 bits (53), Expect = 5.1
Identities = 15/59 (25%), Positives = 24/59 (40%)
Frame = -3
Query: 316 TIHRATRIFRLLQVLKFYESEPGGFSATQTEFSFPYLSNSRSRSSFLIPSTRPPTYTRV 140
T+H + R+LQVLK + + +F L N RS + ++ P V
Sbjct: 384 TVHVYSDAMRVLQVLKLFHQHKDSDDPQKFMLAFGRLLNDSQRSEDIYNNSSSPELREV 442
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 25.4 bits (53), Expect = 5.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 150 YVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGSLS 263
Y G LV+G +K +E D +LNS+ ++P + S
Sbjct: 116 YEGRLVDGTRKMKVEIILDPSRQLNSLAARVSPASNAS 153
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 245 SPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 358
S ++AFIEF+N + E A M + + + V+ S+
Sbjct: 284 SLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIHVDFSQ 321
>SPAC8F11.07c |cdc24||DNA replication protein
Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 501
Score = 24.6 bits (51), Expect = 8.9
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -1
Query: 348 STFKVAPNISVPFIALHASSASCKFSNSMKANLGDLVLPKLSLV 217
+T ++ N+ P + + CKFSN G L + L+LV
Sbjct: 352 TTTEILSNLENPLSSNFLRNDLCKFSNLFSGVSGHLKIQPLTLV 395
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 24.6 bits (51), Expect = 8.9
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +3
Query: 147 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGS 257
+YV L G + F YG + +W+ L+P S
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWM-LSPDNS 37
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,685,624
Number of Sequences: 5004
Number of extensions: 30881
Number of successful extensions: 131
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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