Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20439
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 7e-07
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 50 9e-07
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 1e-06
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 38 0.005
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 38 0.006
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 36 0.026
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.046
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.080
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 34 0.080
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 33 0.18
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 33 0.18
SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.24
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.24
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.32
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 32 0.32
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 32 0.32
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.74
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.74
SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13) 30 1.3
SB_44482| Best HMM Match : RRM_1 (HMM E-Value=0.19) 30 1.3
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 30 1.3
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 29 2.3
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 29 3.0
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 29 3.0
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035) 28 4.0
SB_8252| Best HMM Match : rve (HMM E-Value=0.13) 28 4.0
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 27 9.2
SB_5211| Best HMM Match : 7tm_1 (HMM E-Value=0.015) 27 9.2
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 50.8 bits (116), Expect = 7e-07
Identities = 19/38 (50%), Positives = 27/38 (71%)
Frame = +3
Query: 141 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 254
+RVY+G + + K ++EREF+ +G L VWVA NPPG
Sbjct: 2 SRVYIGNIGDNASKREIEREFETFGPLRDVWVARNPPG 39
Score = 33.1 bits (72), Expect = 0.14
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +2
Query: 248 PRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 358
P FAF FE+ ++AEDA ++G + G +VE+++
Sbjct: 38 PGFAFCVFEDRRDAEDAVRELDGRYICGQRARVELAK 74
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 50.4 bits (115), Expect = 9e-07
Identities = 20/38 (52%), Positives = 27/38 (71%)
Frame = +3
Query: 141 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 254
T++YVG L +LER F+K+G+L+ VWVA NPPG
Sbjct: 4 TKLYVGNLGRNADSSELERAFEKFGRLSKVWVARNPPG 41
Score = 36.7 bits (81), Expect = 0.011
Identities = 14/36 (38%), Positives = 25/36 (69%)
Frame = +2
Query: 248 PRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 355
P FAF+E+E+ ++AE+A ++G + T++VE S
Sbjct: 40 PGFAFVEYEDYRDAEEAVRELDGANVCDRTIRVEFS 75
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 50.0 bits (114), Expect = 1e-06
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +3
Query: 141 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 254
T+VY+G L + K ++E EF YG L VWVA NPPG
Sbjct: 32 TKVYIGSLGDNASKREIENEFGYYGPLKDVWVARNPPG 69
Score = 32.3 bits (70), Expect = 0.24
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +2
Query: 248 PRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 358
P FAF F++ ++AEDA ++G + G ++VE+++
Sbjct: 68 PGFAFCIFDDRRDAEDAVRELDGRYICGQRVRVELAK 104
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 37.9 bits (84), Expect = 0.005
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +2
Query: 248 PRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 358
P FAF+EFE+ ++AEDA +G E G ++VE R
Sbjct: 300 PPFAFVEFEDPRDAEDAVKGRDGHEFDGYRIRVEFPR 336
Score = 31.5 bits (68), Expect = 0.43
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 129 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV 230
+S RVYVG L + ++++DL F KYG + V
Sbjct: 257 NSNDCRVYVGNLPQDVREKDLHDIFYKYGHIADV 290
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 37.5 bits (83), Expect = 0.006
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +2
Query: 254 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 358
+ F+EFE+ ++A+DA NG EMLG + VE SR
Sbjct: 38 YGFVEFEDDRDADDAVYECNGKEMLGERILVEHSR 72
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 144 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 230
RVY+G L G ++D+ R F YG+L +
Sbjct: 4 RVYLGRLPYGTTEDDVRRFFRSYGRLRDI 32
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 37.5 bits (83), Expect = 0.006
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +2
Query: 254 FAFIEFENLQEAEDACSAMNGTEMLGATLKVE 349
+A +E+E +EA+ A A+NG EMLG + V+
Sbjct: 336 YALVEYETFKEAQSALEALNGAEMLGQNISVD 367
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 35.5 bits (78), Expect = 0.026
Identities = 13/35 (37%), Positives = 25/35 (71%)
Frame = +2
Query: 254 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 358
+ F+EF++ ++AEDA +NG +++G + VE S+
Sbjct: 724 YGFVEFDDHRDAEDAVHDLNGRDLIGERVVVEFSK 758
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 34.7 bits (76), Expect = 0.046
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 242 KSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKV 346
+S F F+ F N ++A+ A ++NG E+ G TLK+
Sbjct: 97 RSRGFGFVTFANPEDAQTAVKSLNGKEVQGRTLKI 131
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 33.9 bits (74), Expect = 0.080
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +3
Query: 141 TRVYVGGLVEGIKKEDLEREFDKYGKLNSV 230
TR++VGGL I +LEREFD++G + +
Sbjct: 318 TRLWVGGLGPWISIPELEREFDRFGAIRRI 347
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 33.9 bits (74), Expect = 0.080
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 242 KSPRFAFIEFENLQEAEDACSAMNGTEMLGATL 340
KS F F+ FE +EAE+A + +NG E+ G L
Sbjct: 147 KSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRL 179
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 32.7 bits (71), Expect = 0.18
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +2
Query: 236 STKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 358
++K F F+EFE ++ A MN +E+ G T++V +++
Sbjct: 42 TSKHRGFGFVEFEFAEDTAAAIDNMNESELFGRTIRVNLAK 82
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 32.7 bits (71), Expect = 0.18
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +3
Query: 147 VYVGGLVEGIKKEDLEREFDKYGKLNSV 230
++VG L E I++ED+ + F +YG++ SV
Sbjct: 8 LWVGNLPENIREEDIVKHFTRYGRVESV 35
Score = 30.3 bits (65), Expect = 0.98
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +3
Query: 147 VYVGGLVEGIKKEDLEREFDKYGKLNSV 230
++VGG+ + ++ +ER F +YG++ V
Sbjct: 330 IWVGGVTNSLSEQQVERHFGRYGRVTKV 357
>SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 32.7 bits (71), Expect = 0.18
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +3
Query: 126 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKL 221
M+S GT+++VG L + K DLE F YGKL
Sbjct: 1 MASRGTQLFVGRLSKETKLRDLENVFYLYGKL 32
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 32.3 bits (70), Expect = 0.24
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +2
Query: 239 TKSPR-FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 358
T+ PR FAF+ F + + EDA + ++G E G ++KV +R
Sbjct: 266 TQRPRGFAFVTFGSKKNMEDAINELDGQEFDGRSMKVNQAR 306
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 32.3 bits (70), Expect = 0.24
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 254 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 358
+AF+ ++N +A A MNG + TLKV +R
Sbjct: 70 YAFVNYDNPDDANKAVREMNGARLQNKTLKVSFAR 104
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 31.9 bits (69), Expect = 0.32
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 254 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 358
F F+ ++N+ A++A MNG ++ LKV++ R
Sbjct: 305 FGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQLKR 339
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 31.9 bits (69), Expect = 0.32
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 254 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 358
F F+ ++N+ A++A MNG ++ LKV++ R
Sbjct: 320 FGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQLKR 354
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 31.9 bits (69), Expect = 0.32
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 242 KSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKV 346
K + FIE+EN Q A DA ++MN ++ G L+V
Sbjct: 238 KHKGYGFIEYENQQSANDAIASMNLFDLGGQFLRV 272
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 242 KSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKV 346
K FAF+E++ + A+ A MNG + G +KV
Sbjct: 141 KHKGFAFVEYDLPEAAQLALEQMNGVLLGGRNIKV 175
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 30.7 bits (66), Expect = 0.74
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 236 STKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKV 346
+ +S + F++F + A+ A MNG E+ G LK+
Sbjct: 279 TNRSKGYGFVQFREAEAAKRAMEQMNGFELAGRPLKI 315
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 30.7 bits (66), Expect = 0.74
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 257 AFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 358
AFI F + Q A++A +A+N +M G T+K I++
Sbjct: 54 AFILFIDRQSAQNAVAAVNKKQMFGRTIKCTIAK 87
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 147 VYVGGLVEGIKKEDLEREFDKYGKLNSVWV 236
VYVG L + DL + F++YGK+ V +
Sbjct: 12 VYVGNLPYSLTNSDLHKVFERYGKVVKVTI 41
>SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13)
Length = 337
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +3
Query: 147 VYVGGLVEGIKKEDLEREFDKYGKLNSV 230
V+VG L +KK+ L++ F KYG++ SV
Sbjct: 23 VFVGNLPLTLKKKALKKYFSKYGEVESV 50
>SB_44482| Best HMM Match : RRM_1 (HMM E-Value=0.19)
Length = 486
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 147 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGS 257
VYVG + + K+D+ R F KYG + V V G+
Sbjct: 372 VYVGKISDETHKDDVWRRFRKYGPIEKVTVHFRDNGN 408
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 141 TRVYVGGLVEGIKKEDLEREFDKYGKLNSV 230
T +YVGGL + ++DL F ++G+L S+
Sbjct: 304 TTLYVGGLEGKVTEQDLRDHFYQFGELRSI 333
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 254 FAFIEFENLQEAEDACSAMNGTEMLG 331
+ F+EF+ +AEDA NG +MLG
Sbjct: 40 YGFVEFDYSDDAEDAVYECNGKKMLG 65
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 129 SSGGTRVYVGGLVEGIKKEDLEREFDKYG 215
S+ +V++GGL G +EDL+ F YG
Sbjct: 198 SANDGKVFIGGLAFGTTEEDLKEYFSTYG 226
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 144 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN 245
+++VGGL KE L+ F KYG+L V + ++
Sbjct: 30 KLFVGGLSYETTKESLKEYFSKYGELVGVDIKMD 63
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 28.7 bits (61), Expect = 3.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 144 RVYVGGLVEGIKKEDLEREFDKYGKL 221
+V++G L G+K D+ F KYG +
Sbjct: 358 QVFIGNLPSGVKDADVNEVFSKYGTI 383
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 254 FAFIEFENLQEAEDACSAMNGTEMLGATLKV 346
FAF+++ +EAE A NG ++ G+ ++V
Sbjct: 249 FAFVDYATAEEAEKGQRAHNGRQVEGSNIRV 279
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 28.7 bits (61), Expect = 3.0
Identities = 8/27 (29%), Positives = 20/27 (74%)
Frame = +3
Query: 144 RVYVGGLVEGIKKEDLEREFDKYGKLN 224
++++GGL +ED+++ F ++GK++
Sbjct: 184 KIFIGGLSTNTSEEDMKKYFSQFGKVS 210
>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 28.3 bits (60), Expect = 4.0
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +2
Query: 254 FAFIEFENLQEAEDACSAMNGTEMLG 331
+ F+EF++ ++A+D +NG +LG
Sbjct: 40 YGFVEFDDYRDADDCVYDLNGRNLLG 65
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 132 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL 242
S TRVY G L ++ DLE+ YG++ + + L
Sbjct: 2 SRSTRVYFGRLPRDCRERDLEKFVRGYGRVREISMKL 38
>SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)
Length = 258
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 242 KSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 361
+S F F+ EN ++ ED +G E G LKV + K
Sbjct: 81 RSRGFGFVTLENQEDLEDVTRKFDGFEYEGRRLKVAEASK 120
>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
Length = 264
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 387 SEVGAAVTSGVVVHSEVREEAGLTTH 464
S+VG+ VT +VVH +EEA L+ H
Sbjct: 35 SDVGSQVTLLLVVHESKKEEAKLSLH 60
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 141 TRVYVGGLVEGIKKEDLEREFDKYGKL 221
T VYVG L +K +L++ F +YG +
Sbjct: 615 TTVYVGNLPPDVKDYELQQMFSQYGSI 641
>SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -2
Query: 326 TSQYHSSRYTHLPPPASS 273
T++YH ++T LPPP+ S
Sbjct: 169 TTEYHPEQHTPLPPPSKS 186
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 254 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 358
F F+++ ++A+ A +NG + LKV SR
Sbjct: 90 FGFVDYNTTEDAQKAIDKLNGFTIGNKVLKVAFSR 124
>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 834
Score = 27.1 bits (57), Expect = 9.2
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = -3
Query: 376 AGPVPLSRDLYFQSGA*HLSTIHRATRIFRLLQVLK---FYESEPGGFSATQTEFSFPYL 206
+ P+ S LY S S +++++ +++ + K Y+S P S++ + S+ Y
Sbjct: 718 SSPLYKSSSLYKSSSLYKSSALYKSSPLYKCSSLCKSSSLYKSSPLHKSSSLYKSSYLYK 777
Query: 205 SNSRSRSSFLIPST 164
S+ +SSFL S+
Sbjct: 778 SSYLYKSSFLYKSS 791
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +3
Query: 141 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGSLS 263
T++YV L + K+ ++ F YG++ +V + + +LS
Sbjct: 1157 TKLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLS 1197
>SB_5211| Best HMM Match : 7tm_1 (HMM E-Value=0.015)
Length = 728
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 384 GSEVGAAVTSGVVVHSEVREEAGLTTHTVAAAAGR 488
G VGA++TS V +RE+ G TT+TV G+
Sbjct: 163 GVFVGASMTSVV---QRIREDLGATTYTVTCQYGK 194
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,266,679
Number of Sequences: 59808
Number of extensions: 221913
Number of successful extensions: 604
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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