Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20439
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 47 9e-06
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 47 9e-06
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 47 9e-06
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 43 1e-04
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 43 1e-04
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 38 0.006
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 38 0.006
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 38 0.006
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 35 0.030
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 35 0.030
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 35 0.030
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 35 0.030
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 35 0.030
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 34 0.052
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 33 0.092
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 33 0.12
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 33 0.12
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 33 0.12
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 33 0.12
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 33 0.12
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 33 0.16
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 33 0.16
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 33 0.16
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 33 0.16
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 33 0.16
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 32 0.21
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 32 0.28
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 32 0.28
U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya bind... 31 0.37
Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical pr... 30 0.85
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 30 0.85
U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical p... 30 0.85
U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical p... 30 0.85
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 30 0.85
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 30 0.85
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 30 1.1
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 29 2.0
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 29 2.0
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 29 2.0
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 29 2.0
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z81529-5|CAB04296.1| 288|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 4.6
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 4.6
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 27 8.0
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 27 8.0
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 27 8.0
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 27 8.0
AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger t... 27 8.0
AF000263-13|AAO21393.1| 695|Caenorhabditis elegans Hypothetical... 27 8.0
AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical... 27 8.0
AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical... 27 8.0
AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical ... 27 8.0
AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical ... 27 8.0
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 27 8.0
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 46.8 bits (106), Expect = 9e-06
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = +3
Query: 144 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 254
+VYVGGL ++LE FD++G++ VWVA PPG
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPG 40
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/53 (33%), Positives = 35/53 (66%)
Frame = +2
Query: 197 RVR*IWKTKLSLGSTKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 355
R+R +W + + P FAF+E++++++AEDA A++G+ + G +VE+S
Sbjct: 28 RIRKVWVAR------RPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 46.8 bits (106), Expect = 9e-06
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = +3
Query: 144 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 254
+VYVGGL ++LE FD++G++ VWVA PPG
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPG 40
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/53 (33%), Positives = 35/53 (66%)
Frame = +2
Query: 197 RVR*IWKTKLSLGSTKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 355
R+R +W + + P FAF+E++++++AEDA A++G+ + G +VE+S
Sbjct: 28 RIRKVWVAR------RPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 46.8 bits (106), Expect = 9e-06
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = +3
Query: 144 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 254
+VYVGGL ++LE FD++G++ VWVA PPG
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPG 40
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/53 (33%), Positives = 35/53 (66%)
Frame = +2
Query: 197 RVR*IWKTKLSLGSTKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 355
R+R +W + + P FAF+E++++++AEDA A++G+ + G +VE+S
Sbjct: 28 RIRKVWVAR------RPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 42.7 bits (96), Expect = 1e-04
Identities = 19/45 (42%), Positives = 30/45 (66%)
Frame = +2
Query: 224 LSLGSTKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 358
+ + S + P FAF+EFE+ ++AEDA A +G E G ++VE +R
Sbjct: 38 VDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTR 82
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = +3
Query: 126 MSSGGT---RVYVGGLVEGIKKEDLEREFDKYGKLNSV 230
M GG+ +VYVG L ++++++E F KYG++ V
Sbjct: 1 MPRGGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYV 38
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 42.7 bits (96), Expect = 1e-04
Identities = 19/45 (42%), Positives = 30/45 (66%)
Frame = +2
Query: 224 LSLGSTKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 358
+ + S + P FAF+EFE+ ++AEDA A +G E G ++VE +R
Sbjct: 38 VDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTR 82
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = +3
Query: 126 MSSGGT---RVYVGGLVEGIKKEDLEREFDKYGKLNSV 230
M GG+ +VYVG L ++++++E F KYG++ V
Sbjct: 1 MPRGGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYV 38
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 37.5 bits (83), Expect = 0.006
Identities = 16/37 (43%), Positives = 29/37 (78%), Gaps = 2/37 (5%)
Frame = +2
Query: 254 FAFIEFENLQEAEDACSAMNGTEMLGATLK--VEISR 358
FAF++FE+ ++AEDAC ++G M G++++ VE++R
Sbjct: 37 FAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMAR 73
Score = 27.9 bits (59), Expect = 4.6
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 144 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 230
R+Y+G + ++ D+ER YGK+N++
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNI 31
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 37.5 bits (83), Expect = 0.006
Identities = 16/37 (43%), Positives = 29/37 (78%), Gaps = 2/37 (5%)
Frame = +2
Query: 254 FAFIEFENLQEAEDACSAMNGTEMLGATLK--VEISR 358
FAF++FE+ ++AEDAC ++G M G++++ VE++R
Sbjct: 37 FAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMAR 73
Score = 27.9 bits (59), Expect = 4.6
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 144 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 230
R+Y+G + ++ D+ER YGK+N++
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNI 31
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 37.5 bits (83), Expect = 0.006
Identities = 16/37 (43%), Positives = 29/37 (78%), Gaps = 2/37 (5%)
Frame = +2
Query: 254 FAFIEFENLQEAEDACSAMNGTEMLGATLK--VEISR 358
FAF++FE+ ++AEDAC ++G M G++++ VE++R
Sbjct: 37 FAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMAR 73
Score = 27.9 bits (59), Expect = 4.6
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 144 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 230
R+Y+G + ++ D+ER YGK+N++
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNI 31
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 35.1 bits (77), Expect = 0.030
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +2
Query: 254 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 352
F F+ +EN Q A +A SAMNG ++ LKV++
Sbjct: 378 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 410
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 35.1 bits (77), Expect = 0.030
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +2
Query: 254 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 352
F F+ +EN Q A +A SAMNG ++ LKV++
Sbjct: 542 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 35.1 bits (77), Expect = 0.030
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +2
Query: 254 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 352
F F+ +EN Q A +A SAMNG ++ LKV++
Sbjct: 542 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 35.1 bits (77), Expect = 0.030
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +2
Query: 254 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 352
F F+ +EN Q A +A SAMNG ++ LKV++
Sbjct: 471 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 503
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 35.1 bits (77), Expect = 0.030
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +2
Query: 254 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 352
F F+ +EN Q A +A SAMNG ++ LKV++
Sbjct: 542 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 574
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 34.3 bits (75), Expect = 0.052
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 239 TKSPR-FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 361
T PR FAFIEF A+ A MNG E G L+V ++ K
Sbjct: 42 TGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVNLANK 83
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 33.5 bits (73), Expect = 0.092
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 236 STKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 358
S K F F+EF+ ++A A MN +E+ G T++V +R
Sbjct: 48 SGKHRGFGFVEFDMAEDAAMAIDNMNESELFGKTIRVNFAR 88
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 33.1 bits (72), Expect = 0.12
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +2
Query: 254 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 361
F F++F++ ++A+DA +NG E+ G + +E R+
Sbjct: 37 FGFVDFQDQRDADDAVHDLNGKELCGERVILEFPRR 72
Score = 27.9 bits (59), Expect = 4.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 144 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 230
RVY+G L D+E F YGKL+ V
Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDV 31
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 33.1 bits (72), Expect = 0.12
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 242 KSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 358
KS F F+ F N +EAE A A++ + + G LK+ + R
Sbjct: 250 KSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCR 288
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 138 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 254
G +YV L E + + L+++F+ YG + S V + G
Sbjct: 316 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENG 354
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 33.1 bits (72), Expect = 0.12
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 242 KSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 358
KS F F+ F N +EAE A A++ + + G LK+ + R
Sbjct: 190 KSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCR 228
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 138 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 254
G +YV L E + + L+++F+ YG + S V + G
Sbjct: 256 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENG 294
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 33.1 bits (72), Expect = 0.12
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 242 KSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 358
KS F F+ F N +EAE A A++ + + G LK+ + R
Sbjct: 187 KSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCR 225
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 138 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 254
G +YV L E + + L+++F+ YG + S V + G
Sbjct: 253 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENG 291
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 33.1 bits (72), Expect = 0.12
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 242 KSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 358
KS F F+ F N +EAE A A++ + + G LK+ + R
Sbjct: 250 KSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCR 288
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 138 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 254
G +YV L E + + L+++F+ YG + S V + G
Sbjct: 316 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENG 354
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 32.7 bits (71), Expect = 0.16
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +2
Query: 215 KTKLSLGSTKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 358
K + + +S F F+ ++N+ ++ A +AMNG ++ LKV++ R
Sbjct: 459 KVFVDRATNQSKCFGFVSYDNIHSSQAAITAMNGFQIGMKRLKVQLKR 506
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 32.7 bits (71), Expect = 0.16
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +2
Query: 254 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 358
F F+EF++ ++AEDA +NG E+ G + ++ S+
Sbjct: 38 FGFVEFDDKRDAEDAVHDLNGKELGGERVILDYSK 72
Score = 28.7 bits (61), Expect = 2.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 144 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 230
R+Y+G L + ++D+E F YG++ V
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV 32
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 32.7 bits (71), Expect = 0.16
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +2
Query: 254 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 358
F F+EF++ ++AEDA +NG E+ G + ++ S+
Sbjct: 38 FGFVEFDDKRDAEDAVHDLNGKELGGERVILDYSK 72
Score = 28.7 bits (61), Expect = 2.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 144 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 230
R+Y+G L + ++D+E F YG++ V
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV 32
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 32.7 bits (71), Expect = 0.16
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +2
Query: 254 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 358
F F+EF++ ++AEDA +NG E+ G + ++ S+
Sbjct: 38 FGFVEFDDKRDAEDAVHDLNGKELGGERVILDYSK 72
Score = 28.7 bits (61), Expect = 2.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 144 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 230
R+Y+G L + ++D+E F YG++ V
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV 32
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 32.7 bits (71), Expect = 0.16
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +2
Query: 215 KTKLSLGSTKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 358
K + + +S F F+ ++N+ ++ A +AMNG ++ LKV++ R
Sbjct: 459 KVFVDRATNQSKCFGFVSYDNIHSSQAAITAMNGFQIGMKRLKVQLKR 506
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 32.3 bits (70), Expect = 0.21
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 242 KSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 349
K + FIEF ++Q AE A +NG E+ G L+V+
Sbjct: 57 KPKGYGFIEFPDIQTAEVAIRNLNGYELSGRILRVD 92
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 31.9 bits (69), Expect = 0.28
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 254 FAFIEFENLQEAEDACSAMNGTEMLGATLKV 346
+AF+ N EA +A ++NGT + G TL+V
Sbjct: 416 YAFVSMSNYTEAYNAMLSLNGTNLAGKTLQV 446
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 31.9 bits (69), Expect = 0.28
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 254 FAFIEFENLQEAEDACSAMNGTEMLGATLKVE 349
+A +E+E +EA +A N T++LG +KV+
Sbjct: 98 YALVEYETQKEANEAIDQSNDTDLLGQNVKVD 129
>U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya binding
family protein 2 protein.
Length = 422
Score = 31.5 bits (68), Expect = 0.37
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 144 RVYVGGLVEGIKKEDLEREFDKYGKLNSVW 233
+V+VGGL +K+ D+ F +YG+L W
Sbjct: 89 KVFVGGLPSCVKESDILNFFSRYGRLQVDW 118
>Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical
protein T12D8.2 protein.
Length = 207
Score = 30.3 bits (65), Expect = 0.85
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 254 FAFIEFENLQEAEDACSAMNGTEMLGATLKV 346
FA++ FEN Q+ A S +NG + LKV
Sbjct: 55 FAYVTFENEQQMNTAISGLNGADFGNRVLKV 85
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 30.3 bits (65), Expect = 0.85
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 242 KSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 358
K+ R+AF+ +E + A A MNG EM G ++ R
Sbjct: 270 KTQRYAFVRYEKKECATKAIMEMNGKEMAGNQVRCSWGR 308
>U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical
protein C44B7.2b protein.
Length = 339
Score = 30.3 bits (65), Expect = 0.85
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = +2
Query: 257 AFIEFENLQEAEDACSAMNGTEMLG--ATLKVEISR 358
A +EFE+++ A+ A AMNG ++ TLKVE ++
Sbjct: 163 ALVEFESMEVAKAAKHAMNGADIYSGCCTLKVEFAK 198
>U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical
protein C44B7.2a protein.
Length = 597
Score = 30.3 bits (65), Expect = 0.85
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = +2
Query: 257 AFIEFENLQEAEDACSAMNGTEMLG--ATLKVEISR 358
A +EFE+++ A+ A AMNG ++ TLKVE ++
Sbjct: 163 ALVEFESMEVAKAAKHAMNGADIYSGCCTLKVEFAK 198
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 30.3 bits (65), Expect = 0.85
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +3
Query: 144 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 230
+V+VGGL ++DL F+++GK++ +
Sbjct: 111 KVFVGGLPSDYSEQDLRSHFEQFGKVDDI 139
Score = 28.3 bits (60), Expect = 3.4
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +3
Query: 123 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKL 221
T + +++VGG+ + EDL F +YG++
Sbjct: 23 TKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEV 55
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 30.3 bits (65), Expect = 0.85
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +3
Query: 144 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 230
+V+VGGL ++DL F+++GK++ +
Sbjct: 111 KVFVGGLPSDYSEQDLRSHFEQFGKVDDI 139
Score = 28.3 bits (60), Expect = 3.4
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +3
Query: 123 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKL 221
T + +++VGG+ + EDL F +YG++
Sbjct: 23 TKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEV 55
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 29.9 bits (64), Expect = 1.1
Identities = 10/34 (29%), Positives = 24/34 (70%)
Frame = +2
Query: 254 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 355
+ ++E++NL++AE + M+G ++ G + VE++
Sbjct: 177 YGYVEYDNLEDAEKSIKHMDGGQIDGMAVHVEMT 210
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 239 TKSPR-FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 358
T PR FAF+EF A+ A NG + G L+V +++
Sbjct: 41 TGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVNLAQ 81
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 239 TKSPR-FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 361
T PR FAF+EF A+ A +NG G L+V + K
Sbjct: 43 TGRPRGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLRVNYANK 84
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 254 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 358
FAF+ FE+ +A A + +N M LKVE +R
Sbjct: 219 FAFVTFESRDDAARAIAELNDIRMYHMVLKVEWTR 253
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 144 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGS 257
R+YV + +++DL F YG++ SV + N GS
Sbjct: 52 RIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGS 89
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +2
Query: 209 IWKTKLSLGSTKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKV 346
+ KTK+ + P +AF+EF + +A A MN +L +KV
Sbjct: 72 VTKTKVIFDGSNDP-YAFVEFSDHGQASQALQTMNKRLLLDREMKV 116
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 236 STKSPRFAFIEFENLQEAEDACSAMNG 316
+TKS + F+ + +EAE A MNG
Sbjct: 172 TTKSKGYGFVSYPKREEAERAIEQMNG 198
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 144 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGS 257
R+YV + +++DL F YG++ SV + N GS
Sbjct: 52 RIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGS 89
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 242 KSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 352
+ P FAF+ F+ A DA +NG ++ KVE+
Sbjct: 62 RPPGFAFVTFKRTVHAFDAVKYLNGKKICDLEAKVEM 98
>Z81529-5|CAB04296.1| 288|Caenorhabditis elegans Hypothetical
protein F35E8.7 protein.
Length = 288
Score = 27.9 bits (59), Expect = 4.6
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +3
Query: 360 SGTGPAEVGSEVGAAVTSGVVVHSEVREEAGLTTHTVAAAAGRT 491
S PA + V AV + + V A +TT TVAAAA T
Sbjct: 199 STAAPAAPTTTVAPAVVTTTAAPAAVTTTAAVTTTTVAAAAATT 242
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 27.9 bits (59), Expect = 4.6
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 215 KTKLSLGSTKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 361
K + S S FAFI F + + ++ A AMNG + + V + K
Sbjct: 131 KIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFK 179
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 27.9 bits (59), Expect = 4.6
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 215 KTKLSLGSTKSPRFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 361
K + S S FAFI F + + ++ A AMNG + + V + K
Sbjct: 141 KIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFK 189
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 144 RVYVGGLVEGIKKEDLEREFDKYGKL 221
+V++GGL ED+++ F+ YGK+
Sbjct: 135 KVFIGGLSATSTLEDMKQYFETYGKV 160
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 236 STKSPRFAFIEFENLQEAEDACSAMNG 316
+TKS + F+ + +EAE A MNG
Sbjct: 59 TTKSKGYGFVSYPKREEAERAIEQMNG 85
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 236 STKSPRFAFIEFENLQEAEDACSAMNG 316
+TKS + F+ + +EAE A MNG
Sbjct: 69 TTKSKGYGFVSYPKREEAERAIEQMNG 95
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 236 STKSPRFAFIEFENLQEAEDACSAMNG 316
+TKS + F+ + +EAE A MNG
Sbjct: 140 TTKSKGYGFVSYPKREEAERAIEQMNG 166
>AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger
transcription factorfamily protein 4 protein.
Length = 367
Score = 27.1 bits (57), Expect = 8.0
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +2
Query: 254 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 355
F F++F A+++C ++NG L V ++
Sbjct: 121 FGFVQFNEAGSADESCRSLNGMSWKACCLDVHLA 154
>AF000263-13|AAO21393.1| 695|Caenorhabditis elegans Hypothetical
protein T08B2.5g protein.
Length = 695
Score = 27.1 bits (57), Expect = 8.0
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +2
Query: 218 TKLSLGSTKSPRFAFIEFENLQEAEDACSAMNGTEML--GATLKVEISR 358
TK + + FAF+EF N + AE + G L G TL VE ++
Sbjct: 28 TKFDKNTKQIRTFAFVEFSNRETAEQWMTDYEGWLTLDDGRTLAVEYAK 76
>AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical
protein T08B2.5f protein.
Length = 838
Score = 27.1 bits (57), Expect = 8.0
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +2
Query: 218 TKLSLGSTKSPRFAFIEFENLQEAEDACSAMNGTEML--GATLKVEISR 358
TK + + FAF+EF N + AE + G L G TL VE ++
Sbjct: 171 TKFDKNTKQIRTFAFVEFSNRETAEQWMTDYEGWLTLDDGRTLAVEYAK 219
>AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical
protein T08B2.5c protein.
Length = 866
Score = 27.1 bits (57), Expect = 8.0
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +2
Query: 218 TKLSLGSTKSPRFAFIEFENLQEAEDACSAMNGTEML--GATLKVEISR 358
TK + + FAF+EF N + AE + G L G TL VE ++
Sbjct: 199 TKFDKNTKQIRTFAFVEFSNRETAEQWMTDYEGWLTLDDGRTLAVEYAK 247
>AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical
protein T08B2.5a protein.
Length = 924
Score = 27.1 bits (57), Expect = 8.0
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +2
Query: 218 TKLSLGSTKSPRFAFIEFENLQEAEDACSAMNGTEML--GATLKVEISR 358
TK + + FAF+EF N + AE + G L G TL VE ++
Sbjct: 257 TKFDKNTKQIRTFAFVEFSNRETAEQWMTDYEGWLTLDDGRTLAVEYAK 305
>AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical
protein T08B2.5b protein.
Length = 925
Score = 27.1 bits (57), Expect = 8.0
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +2
Query: 218 TKLSLGSTKSPRFAFIEFENLQEAEDACSAMNGTEML--GATLKVEISR 358
TK + + FAF+EF N + AE + G L G TL VE ++
Sbjct: 258 TKFDKNTKQIRTFAFVEFSNRETAEQWMTDYEGWLTLDDGRTLAVEYAK 306
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 144 RVYVGGLVEGIKKEDLEREFDKYGKL 221
+V++GGL ED+++ F+ YGK+
Sbjct: 135 KVFIGGLSATSTLEDMKQYFETYGKV 160
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,231,347
Number of Sequences: 27780
Number of extensions: 168195
Number of successful extensions: 627
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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