Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20438
         (577 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    24   0.81 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    24   0.81 
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   1.4  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    23   1.9  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    23   1.9  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    23   1.9  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    23   1.9  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    23   1.9  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    22   3.3  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          22   3.3  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   5.7  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    21   9.9  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   9.9  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 24.2 bits (50), Expect = 0.81
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 422 STEPIDLSV-RICSPLTLAHPPVAPEPPRKRLNYS 523
           S   IDLS  R+ +  T +HP     PP +R+ YS
Sbjct: 26  SATSIDLSTFRVPTYGTTSHPTSKLVPPDERITYS 60


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 24.2 bits (50), Expect = 0.81
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 422 STEPIDLSV-RICSPLTLAHPPVAPEPPRKRLNYS 523
           S   IDLS  R+ +  T +HP     PP +R+ YS
Sbjct: 26  SATSIDLSTFRVPTYGTTSHPTSKLVPPDERITYS 60


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 195 ARKFGIHRRQIQKWLQAEPACERR 266
           A   G+  RQI+ W Q   A ER+
Sbjct: 191 AENLGLSERQIKIWFQNRRAKERK 214


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/43 (23%), Positives = 20/43 (46%)
 Frame = +1

Query: 295 ITSSICCWFPRKCKITYTTSTSYDANVSFIAYTSTCSSIGTAV 423
           +TSS   W+ R   ++Y  +T      +     S C+++G  +
Sbjct: 67  VTSSNRPWWERYQPVSYILNTRSGDEAALADMISRCNAVGVRI 109


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/43 (23%), Positives = 20/43 (46%)
 Frame = +1

Query: 295 ITSSICCWFPRKCKITYTTSTSYDANVSFIAYTSTCSSIGTAV 423
           +TSS   W+ R   ++Y  +T      +     S C+++G  +
Sbjct: 68  VTSSNRPWWERYQPVSYILNTRSGDETALADMISRCNAVGVRI 110


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/43 (23%), Positives = 20/43 (46%)
 Frame = +1

Query: 295 ITSSICCWFPRKCKITYTTSTSYDANVSFIAYTSTCSSIGTAV 423
           +TSS   W+ R   ++Y  +T      +     S C+++G  +
Sbjct: 68  VTSSNRPWWERYQPVSYILNTRSGDEAALADMISRCNAVGVRI 110


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +1

Query: 313 CWFPRKCKIT 342
           CW P  CK+T
Sbjct: 492 CWVPHSCKLT 501


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 195 ARKFGIHRRQIQKWLQAEPACERR 266
           A   G+  RQ++ W Q   A ER+
Sbjct: 190 ANSLGLSERQVKIWFQNRRAKERK 213


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +3

Query: 147 EAYRRDSQCRGNQRATARKFGIHRRQIQKWLQ 242
           E +R    CR  +   A+   +  RQI+ W Q
Sbjct: 103 EFHRSKYLCRPRRIQMAQNLNLTERQIKIWFQ 134


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +3

Query: 147 EAYRRDSQCRGNQRATARKFGIHRRQIQKWLQ 242
           E +R    CR  +   A+   +  RQI+ W Q
Sbjct: 123 EFHRSKYLCRPRRIQMAQNLNLTERQIKIWFQ 154


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 117 KYGGNQLGPQRD 82
           KY G Q GPQ D
Sbjct: 20  KYSGQQHGPQSD 31


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 241 KLNLLASGAVKESSTAGAITSSICCWF 321
           KL LLAS  +  +    A T  I C+F
Sbjct: 4   KLCLLASALLISTHQTEAKTDKILCFF 30


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 118 FHHNLNYKSLKRTDVIPNVEETNVPPLGSLASI 216
           FH N+++  L    V P+V       LG L +I
Sbjct: 193 FHVNMSHNKLINLVVAPSVPFEQDTGLGGLQNI 225


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,771
Number of Sequences: 336
Number of extensions: 2134
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14308417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)