Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20438
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    31   0.091
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    28   0.85 
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    27   2.0  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    26   4.5  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    25   7.9  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 31.5 bits (68), Expect = 0.091
 Identities = 21/73 (28%), Positives = 36/73 (49%)
 Frame = +1

Query: 202  SLASIADRSKSGYKLNLLASGAVKESSTAGAITSSICCWFPRKCKITYTTSTSYDANVSF 381
            S +SIA  S +G   + +A+ +V +SST+   T+S          +   T +S  +  + 
Sbjct: 1000 STSSIAAASVTGSSTSSVATASVTDSSTSSVATASATDSSTSSIAVASVTGSSTSSVATA 1059

Query: 382  IAYTSTCSSIGTA 420
             A  S+ SS+ TA
Sbjct: 1060 SATDSSTSSVATA 1072



 Score = 27.5 bits (58), Expect = 1.5
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = +1

Query: 202  SLASIADRSKSGYKLNLLASGAVKESSTAGAITSSICCWFPRKCKITYTTSTSYDANVSF 381
            S +SIA  S SG   + +A+ +  +SST+    +S+             T +S  +  + 
Sbjct: 974  STSSIATASVSGSSTSSVATASATDSSTSSIAAASVTGSSTSSVATASVTDSSTSSVATA 1033

Query: 382  IAYTSTCSSIGTA 420
             A  S+ SSI  A
Sbjct: 1034 SATDSSTSSIAVA 1046



 Score = 27.5 bits (58), Expect = 1.5
 Identities = 23/73 (31%), Positives = 34/73 (46%)
 Frame = +1

Query: 202  SLASIADRSKSGYKLNLLASGAVKESSTAGAITSSICCWFPRKCKITYTTSTSYDANVSF 381
            S +SIA  S +G   + +A+ +  +SST+   T+SI            T S +     S 
Sbjct: 1039 STSSIAVASVTGSSTSSVATASATDSSTSSVATASITGSLSSSIA---TASVTGSPTSSV 1095

Query: 382  IAYTSTCSSIGTA 420
             A +ST S  GTA
Sbjct: 1096 TAVSSTSSVEGTA 1108


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 28.3 bits (60), Expect = 0.85
 Identities = 26/89 (29%), Positives = 37/89 (41%)
 Frame = +1

Query: 142 SLKRTDVIPNVEETNVPPLGSLASIADRSKSGYKLNLLASGAVKESSTAGAITSSICCWF 321
           +L  T+V  ++  T  P  GSL    D   S Y            SS+  + TSS     
Sbjct: 84  TLTATEVSSSLCTTPCPGYGSLMCGGDLYWSVYLTGNGVLQTTVSSSSVSSTTSSSSSSS 143

Query: 322 PRKCKITYTTSTSYDANVSFIAYTSTCSS 408
           P     T TTS S  ++ S  + +S+ SS
Sbjct: 144 PSSSSTTTTTSPSSSSSSSSSSSSSSSSS 172


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 467 TLAHPPVAPEPPRKRLNYSDLTYLKMKM 550
           T +H P A  PP  +LN++ L  LK ++
Sbjct: 415 TQSHVPSAKVPPTSKLNHAQLAMLKSQI 442


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 184 NVPPLGSLASIADRSKSGYKLNLLASGAVKESSTAGAI 297
           +VPP  S  + AD S +  KLN + + +V   +T  ++
Sbjct: 99  SVPPTSSAETTADNSDTEMKLNPIPAYSVPADTTGSSL 136


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 82  VALRAELVPAVFFHHNL-NYKSLKRTDVIPNVEETNVPP 195
           + +  EL+PA+    NL NY+S  + D +  + +T V P
Sbjct: 239 IDINNELIPAIIVARNLINYES-NQMDAVKLISDTFVEP 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,957,656
Number of Sequences: 5004
Number of extensions: 33549
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)