Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20438
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0744 + 5767609-5767851,5768036-5768203                           29   2.0  
02_01_0794 - 5955763-5957238                                           28   4.6  
06_01_0292 + 2136637-2137050,2137162-2137671                           28   6.1  
08_02_1013 + 23554996-23555139,23555456-23555541,23556375-235563...    27   8.1  
08_01_0867 + 8458570-8459168,8460128-8460313,8462684-8463167           27   8.1  
04_04_0708 - 27441373-27442611                                         27   8.1  

>01_01_0744 + 5767609-5767851,5768036-5768203
          Length = 136

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/20 (70%), Positives = 15/20 (75%)
 Frame = -2

Query: 513 KRLRGGSGATGGCANVSGEH 454
           KRLRGGS  T G A+VS EH
Sbjct: 72  KRLRGGSSHTLGIADVSEEH 91


>02_01_0794 - 5955763-5957238
          Length = 491

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = -3

Query: 293 APAVELSLTAPLASRFSL*PLLDLSAMDAKLPSGGTLVSSTLGITSVR 150
           APA    + APLA+   L P++DL+ + A   +  +LV++ L  T +R
Sbjct: 9   APAQPHFVLAPLAAHGHLIPMVDLAGLLAAHGARASLVTTPLNATWLR 56


>06_01_0292 + 2136637-2137050,2137162-2137671
          Length = 307

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +3

Query: 78  DRRAEGRAGSRRIFPPQFKLQVLE-AYRRDSQCRGNQR-ATARKFGIHRRQIQKWLQ 242
           D  A+G  G +++   + +  VLE  ++  S     Q+ A A + G+  RQ++ W Q
Sbjct: 104 DDGADGAGGRKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQ 160


>08_02_1013 +
           23554996-23555139,23555456-23555541,23556375-23556399,
           23556655-23556711,23556795-23556852,23557767-23558614,
           23558862-23558921
          Length = 425

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -2

Query: 501 GGSGATGGCANVSGEHIRTDKSIGSV---DGCTNA*TGRGVG 385
           G   A+G  A++ G   +T+K +GSV   + C    T R VG
Sbjct: 190 GEDQASGKKASIEGSSYKTEKQVGSVYDEEACKMTTTERSVG 231


>08_01_0867 + 8458570-8459168,8460128-8460313,8462684-8463167
          Length = 422

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 473 AHPPVAPEPPRKRLNYSD 526
           AHPP +P+ P +RLN  D
Sbjct: 130 AHPPASPDHPLRRLNPHD 147


>04_04_0708 - 27441373-27442611
          Length = 412

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 407 ALVQPSTE-PIDLSVRICSPLTLAHPPVAPEPPRKRLNYSDLTYLKMKMRS 556
           A+  PS+    DL++  CSP  L  PP  P PP   L++      K K RS
Sbjct: 218 AIPSPSSVLDADLTLSPCSPPLLPPPPPPPPPP-PFLDHDRPALRKAKARS 267


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,107,758
Number of Sequences: 37544
Number of extensions: 271311
Number of successful extensions: 1009
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)