Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20438
         (577 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24633| Best HMM Match : Transposase_8 (HMM E-Value=0.076)           36   0.031
SB_27928| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.096
SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_242| Best HMM Match : AFP (HMM E-Value=0.45)                        31   0.89 
SB_7402| Best HMM Match : Extensin_2 (HMM E-Value=2)                   29   2.7  
SB_40330| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_54400| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_30415| Best HMM Match : M (HMM E-Value=6.5e-05)                     28   4.8  
SB_41095| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1)                     27   8.3  

>SB_24633| Best HMM Match : Transposase_8 (HMM E-Value=0.076)
          Length = 255

 Score = 35.5 bits (78), Expect = 0.031
 Identities = 17/47 (36%), Positives = 29/47 (61%)
 Frame = +3

Query: 108 RRIFPPQFKLQVLEAYRRDSQCRGNQRATARKFGIHRRQIQKWLQAE 248
           R+ +  + KL+V+E Y+ +     N+  T R+FGI R+ I +WL+ E
Sbjct: 75  RKSYSREMKLEVIEWYKNNGL---NKNKTCRQFGIPRKCITQWLKME 118


>SB_27928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 33.9 bits (74), Expect = 0.096
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = +1

Query: 277 SSTAGAITSSICCWFPRKCKITYTTSTSYDANVSFIAYTSTCSSIGTAVNRTYRFISTDM 456
           S+T+   T+S  C     C  +YT +TSY +  S+ + TS  S+  T+   T  + +T  
Sbjct: 130 STTSYTSTTSYTCTTSYTCTTSYTCTTSYTSTTSYTSTTSYTST--TSYTSTTSYTTTTS 187

Query: 457 FT 462
           +T
Sbjct: 188 YT 189



 Score = 30.7 bits (66), Expect = 0.89
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +1

Query: 277 SSTAGAITSSICCWFPRKCKITYTTSTSYDANVSFIAYTSTCSSIGTAVNRTYRFISTDM 456
           S+T+   T+S        C  +YT +TSY    S+ + TS  S+  T+   T  + ST  
Sbjct: 124 STTSYTSTTSYTSTTSYTCTTSYTCTTSYTCTTSYTSTTSYTST--TSYTSTTSYTSTTS 181

Query: 457 FT 462
           +T
Sbjct: 182 YT 183



 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 340 TYTTSTSYDANVSFIAYTSTCSSIGTAVNRTYRFISTDMFTA 465
           +YTT+TSY    S+ + TS  S+  T+   T  + ST  +T+
Sbjct: 79  SYTTTTSYTPTTSYTSTTSYTST--TSYTSTTSYTSTTSYTS 118



 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +1

Query: 340 TYTTSTSYDANVSFIAYTSTCSSIGTAVNRTYRFISTDMFTA 465
           +YT++TSY +  S+ + TS  S+  T+   T  + ST  +T+
Sbjct: 91  SYTSTTSYTSTTSYTSTTSYTST--TSYTSTTSYTSTTSYTS 130


>SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 280 STAGAITSSICCWFPRKCKITYTTSTSYDANVSFIAYTS-TCSS 408
           +T+  +T+S  C     C  +YT +TSY    S+   TS TC++
Sbjct: 149 TTSYTLTTSYTCTTSYTCTTSYTHTTSYTCTTSYTCTTSYTCTT 192



 Score = 27.5 bits (58), Expect = 8.3
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +1

Query: 331 CKITYTTSTSYDANVSF---IAYTSTCS-SIGTAVNRTYRFISTDMFT 462
           C  +YT++TSY    S+    +YTST S +  T+   T  + ST  +T
Sbjct: 4   CTTSYTSTTSYTHTTSYTHTTSYTSTPSYTCTTSYTSTPSYTSTTSYT 51


>SB_242| Best HMM Match : AFP (HMM E-Value=0.45)
          Length = 147

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = +1

Query: 277 SSTAGAITSSICCWFPRKCKITYTTSTSYDANVSFIAYTSTCSSIGTAVNRTYRFISTDM 456
           S+T+   T+S        C  +YT++TSY +  S+ + TS  S+       +YR  ST  
Sbjct: 34  STTSYTSTTSYTPTTSYTCTTSYTSTTSYTSTTSYTSTTSYTSTTSYTSTTSYR--STPS 91

Query: 457 FT 462
           +T
Sbjct: 92  YT 93



 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +1

Query: 280 STAGAITSSICCWFPRKCKITYTTSTSYDANVSFIAYTS-TCSSIGTAVNRTYRFISTDM 456
           +T+   T+S  C        +YT++TSY +  S+   TS TC+   T+   T  + ST  
Sbjct: 11  TTSYTSTTSYTCTTSYTSTTSYTSTTSYTSTTSYTPTTSYTCT---TSYTSTTSYTSTTS 67

Query: 457 FTA 465
           +T+
Sbjct: 68  YTS 70



 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 331 CKITYTTSTSYDANVSFIAYTSTCSSIGTAVNRTYRFISTDMFT 462
           C  +YT +TSY +  S+   TS  S+  T+   T  + ST  +T
Sbjct: 4   CTPSYTCTTSYTSTTSYTCTTSYTST--TSYTSTTSYTSTTSYT 45



 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 331 CKITYTTSTSYDANVSFIAYTSTCSSIGTAVNRTYRFISTDMFT 462
           C  +YT++TSY    S+ + TS  S+  T+   T  +  T  +T
Sbjct: 10  CTTSYTSTTSYTCTTSYTSTTSYTST--TSYTSTTSYTPTTSYT 51



 Score = 27.5 bits (58), Expect = 8.3
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = +1

Query: 277 SSTAGAITSSICCWFPRKCKITYTTSTSYDANVSFIAYTSTCSSIGTAVNRTYRFISTDM 456
           S+T+   T+S           +YT++TSY    S+   TS  S+  T+   T  + ST  
Sbjct: 16  STTSYTCTTSYTSTTSYTSTTSYTSTTSYTPTTSYTCTTSYTST--TSYTSTTSYTSTTS 73

Query: 457 FTA 465
           +T+
Sbjct: 74  YTS 76


>SB_7402| Best HMM Match : Extensin_2 (HMM E-Value=2)
          Length = 267

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = +1

Query: 277 SSTAGAITSSICCWFPRKCKITYTTSTSYDANVSFIAYTSTCSSIGTAVNRTYRFISTDM 456
           S+T+   T+S        C  +YT++TSY    S+ + TS  S+   +   T  +  T  
Sbjct: 199 STTSYTCTTSYTSTTSYTCTTSYTSTTSYTPTTSYTSTTSYTSN--PSYTPTPSYTPTTS 256

Query: 457 FTAN 468
           +T+N
Sbjct: 257 YTSN 260



 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +1

Query: 340 TYTTSTSYDANVSFIAYTS-TCSSIGTAVNR---TYRFISTDMFTAN 468
           +YT++TSY    S+ + TS TC++  T+      T  + ST  +T+N
Sbjct: 196 SYTSTTSYTCTTSYTSTTSYTCTTSYTSTTSYTPTTSYTSTTSYTSN 242


>SB_40330| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = +1

Query: 277 SSTAGAITSSICCWFPRKCKITYTTSTSYDANVSFIAYTSTCSSIGTAVNRTYRFISTDM 456
           S+T+   TSS           +YT++TSY +  S+ + TS  S+  T+   T  + ST  
Sbjct: 34  STTSYTSTSSYTSTTSYTSTTSYTSTTSYTSTPSYTSTTSYTST--TSYTSTTSYTSTTS 91

Query: 457 FTA 465
           +T+
Sbjct: 92  YTS 94


>SB_54400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 723

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = +1

Query: 274 ESSTAGAITSSICCWFPRKCKITYTTSTSYDANVSFIAYTSTCSSIGTAVNRTYRFISTD 453
           +S+ AG        W+ +KC   Y T+ SY+A  +    T  CSS       T  F+S+ 
Sbjct: 26  KSNQAGIECEQCLLWYHKKC--IYQTTKSYEALQNNSKLTWICSSCLFPNFSTTHFMSSL 83

Query: 454 MFTA 465
            FT+
Sbjct: 84  DFTS 87


>SB_30415| Best HMM Match : M (HMM E-Value=6.5e-05)
          Length = 1312

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 486  TGGCANVSGEHIRTDKSIGSVDGCTNA*TGRGVGN 382
            +GG  ++SG+ + T   +GS+ G   +  G G+G+
Sbjct: 1226 SGGMGSISGDMVSTSGGMGSISGGMGSSFGGGMGS 1260


>SB_41095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +3

Query: 108 RRIFPPQFKLQVLEAYRRDSQCRGNQRATARKFGIHRRQIQKW 236
           RR +   FKL V+ A+      + + RA  RK+GI  ++I++W
Sbjct: 52  RRSYDVGFKLSVV-AFAE----KASNRAAGRKYGIDEKRIREW 89


>SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1)
          Length = 231

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +1

Query: 340 TYTTSTSYDANVSFIAYTSTCSSIGTAVNRTYRFISTDMFTA 465
           +YT++TSY +  S+ + TS  S+  T+   T  + ST  +T+
Sbjct: 169 SYTSTTSYTSTTSYTSTTSYTST--TSYTSTTSYTSTTSYTS 208


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,394,387
Number of Sequences: 59808
Number of extensions: 278703
Number of successful extensions: 1070
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)