Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20438
(577 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81494-14|CAJ43905.2| 745|Caenorhabditis elegans Hypothetical p... 29 2.4
Z81494-8|CAB54212.3| 707|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z81057-7|CAJ43903.2| 745|Caenorhabditis elegans Hypothetical pr... 29 2.4
AF016425-4|AAB65339.1| 518|Caenorhabditis elegans Hypothetical ... 28 5.5
Z98866-14|CAB11553.1| 524|Caenorhabditis elegans Hypothetical p... 27 7.2
U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical pr... 27 7.2
AF067214-6|AAC17005.2| 457|Caenorhabditis elegans Hypothetical ... 27 7.2
U70850-3|AAB09122.3| 596|Caenorhabditis elegans Zinc finger plu... 27 9.5
AY289599-1|AAP43944.1| 596|Caenorhabditis elegans ZAG-1 protein. 27 9.5
AY224511-1|AAP37457.1| 596|Caenorhabditis elegans ZAG-1 protein. 27 9.5
>Z81494-14|CAJ43905.2| 745|Caenorhabditis elegans Hypothetical
protein F02E9.9b protein.
Length = 745
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 109 AVFFHHNLNYKSLKRTDVIPNVEETNVPPLGSLASIADRSK 231
A F+ ++ NYK T ++P VE+T + L +++ K
Sbjct: 137 AAFYSNSGNYKGFGDTKIVPGVEQTKIRALLEKSAVGTDEK 177
>Z81494-8|CAB54212.3| 707|Caenorhabditis elegans Hypothetical
protein F02E9.9a protein.
Length = 707
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 109 AVFFHHNLNYKSLKRTDVIPNVEETNVPPLGSLASIADRSK 231
A F+ ++ NYK T ++P VE+T + L +++ K
Sbjct: 99 AAFYSNSGNYKGFGDTKIVPGVEQTKIRALLEKSAVGTDEK 139
>Z81057-7|CAJ43903.2| 745|Caenorhabditis elegans Hypothetical
protein F02E9.9b protein.
Length = 745
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 109 AVFFHHNLNYKSLKRTDVIPNVEETNVPPLGSLASIADRSK 231
A F+ ++ NYK T ++P VE+T + L +++ K
Sbjct: 137 AAFYSNSGNYKGFGDTKIVPGVEQTKIRALLEKSAVGTDEK 177
>AF016425-4|AAB65339.1| 518|Caenorhabditis elegans Hypothetical
protein F59A7.8 protein.
Length = 518
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 458 SPLTLAHPPVAPEPPRKRLNYSDLTYLKMKMRSD 559
SP+TL + PV+P R+RL D T + + +
Sbjct: 29 SPMTLENQPVSPMTKRRRLENMDRTITEQMVEDE 62
>Z98866-14|CAB11553.1| 524|Caenorhabditis elegans Hypothetical
protein Y49E10.17 protein.
Length = 524
Score = 27.5 bits (58), Expect = 7.2
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
Frame = +1
Query: 133 NYKSLKRTDVIPNVEETNVPPLGSLASIADRSKSGYKLNLLASGAVKESSTAGAITS-SI 309
N S R + ++ +GS++SIA S ++ + G+V +S + + I
Sbjct: 143 NISSSSRRSSNGSSRSSSSSSVGSMSSIASNVGS---IDSFSDGSVNSNSNQQLVPNPEI 199
Query: 310 CCWFPRKCKITYTTSTSYDANVSFIAYTSTCSSIGT 417
PR + T SF AYT C S+GT
Sbjct: 200 ILADPRALRACMTYQILQQMT-SFDAYTEMCESLGT 234
>U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical protein
M03A8.2 protein.
Length = 2275
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +2
Query: 452 ICSPLTLAHPPVAPEPPRKRLNYSDLTYLKMKMRSDHQS 568
I SP +L P+ P P + DLTYL+ K+ S+HQS
Sbjct: 1688 IPSP-SLTLEPLRPSPVQPPTPLGDLTYLE-KISSNHQS 1724
>AF067214-6|AAC17005.2| 457|Caenorhabditis elegans Hypothetical
protein F56C3.2 protein.
Length = 457
Score = 27.5 bits (58), Expect = 7.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 378 FHCLHLYLFKHWYSRQQN 431
+H ++ F HWYSR QN
Sbjct: 39 YHLINFQEFNHWYSRFQN 56
>U70850-3|AAB09122.3| 596|Caenorhabditis elegans Zinc finger plus
homeodomain, axonguidance protein 1 protein.
Length = 596
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 189 ATARKFGIHRRQIQKWLQAEPACERR 266
A A + G+++R +Q W Q A ERR
Sbjct: 255 AVAEQIGVNKRVVQVWFQNTRAKERR 280
>AY289599-1|AAP43944.1| 596|Caenorhabditis elegans ZAG-1 protein.
Length = 596
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 189 ATARKFGIHRRQIQKWLQAEPACERR 266
A A + G+++R +Q W Q A ERR
Sbjct: 255 AVAEQIGVNKRVVQVWFQNTRAKERR 280
>AY224511-1|AAP37457.1| 596|Caenorhabditis elegans ZAG-1 protein.
Length = 596
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 189 ATARKFGIHRRQIQKWLQAEPACERR 266
A A + G+++R +Q W Q A ERR
Sbjct: 255 AVAEQIGVNKRVVQVWFQNTRAKERR 280
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,247,957
Number of Sequences: 27780
Number of extensions: 201491
Number of successful extensions: 733
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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