Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20438
         (577 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35450.1 68418.m04215 disease resistance protein (CC-NBS-LRR ...    31   0.73 
At3g30320.1 68416.m03828 hypothetical protein                          28   3.9  
At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid t...    28   3.9  

>At5g35450.1 68418.m04215 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 901

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 19/65 (29%), Positives = 32/65 (49%)
 Frame = -3

Query: 332 HFRGNQQHMEEVMAPAVELSLTAPLASRFSL*PLLDLSAMDAKLPSGGTLVSSTLGITSV 153
           H  G+++ +  ++   ++  L    ASRF   PLL +  + +    GG L SS  G+  +
Sbjct: 536 HILGHKKKVRSLLVLGLKEDLWIQSASRFQSLPLLRVLDLSSVKFEGGKLPSSIGGLIHL 595

Query: 152 RFKDL 138
           RF  L
Sbjct: 596 RFLSL 600


>At3g30320.1 68416.m03828 hypothetical protein
          Length = 695

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 193 VARWFPLHWESRLYASRTCSLNCG 122
           + R+ P+H E ++Y SR  S  CG
Sbjct: 651 IERFLPIHLEDKVYFSRASSNRCG 674


>At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to auxin
           down regulated GB:X69640 GI:296442 from [Glycine max];
           contains Pfam profile PF00234: Protease inhibitor/seed
           storage/LTP family
          Length = 297

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 443 SVRICSPLTLAHPPVAPEPPR 505
           +++ C+P T  HPPV P+PP+
Sbjct: 23  TIQACTPCTRPHPPV-PKPPQ 42


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,694,016
Number of Sequences: 28952
Number of extensions: 190881
Number of successful extensions: 675
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)