Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20434
         (677 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000F2E8FA Cluster: PREDICTED: similar to RIKEN cDNA...    35   1.6  
UniRef50_O94527 Cluster: WD repeat protein, human IQWD1 family; ...    35   1.6  
UniRef50_A2XAV4 Cluster: Putative uncharacterized protein; n=2; ...    34   2.8  
UniRef50_A7BL13 Cluster: Putative uncharacterized protein; n=1; ...    33   4.8  
UniRef50_Q7S880 Cluster: Predicted protein; n=1; Neurospora cras...    33   6.4  
UniRef50_UPI0000660420 Cluster: Homolog of Homo sapiens "RING fi...    33   8.4  
UniRef50_Q68CZ2 Cluster: Tensin-3; n=33; Euteleostomi|Rep: Tensi...    33   8.4  

>UniRef50_UPI0000F2E8FA Cluster: PREDICTED: similar to RIKEN cDNA
           1600016N20 gene; n=1; Monodelphis domestica|Rep:
           PREDICTED: similar to RIKEN cDNA 1600016N20 gene -
           Monodelphis domestica
          Length = 756

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +3

Query: 459 INVRAPENASGICAGRATSYCVSLLTDDEARRCACWQSG--PSGPPAPLRD 605
           + +++   A+   AG+  +Y + +LTD +  R   W+ G  P  PP P RD
Sbjct: 93  LEIQSLREAARCPAGKRMNYILRVLTDAKPDRSGAWEPGSPPGAPPRPRRD 143


>UniRef50_O94527 Cluster: WD repeat protein, human IQWD1 family;
           n=1; Schizosaccharomyces pombe|Rep: WD repeat protein,
           human IQWD1 family - Schizosaccharomyces pombe (Fission
           yeast)
          Length = 809

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 303 W*SFYDFLPWVVRFRYSSVVHAAYQIPPPSNLDAQGMTL 187
           W   YDF+ WV R+      H A Q+ PP+N+  Q   L
Sbjct: 457 WGWLYDFMNWVTRYLLGISDHWALQMSPPTNVARQNFVL 495


>UniRef50_A2XAV4 Cluster: Putative uncharacterized protein; n=2;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. indica (Rice)
          Length = 384

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = -2

Query: 280 SMGRPLQVFKCGTCRVPDTSAEQP*RSGHDTPILDSPHKLSACSSL--YET*PLPPRRRH 107
           +M R     K G C    +S+  P  +GH +P    P  L+ACSS   Y + P PP   H
Sbjct: 200 AMARSAAAIKAGGCYSNSSSSHDPAAAGHHSP-PPFPASLAACSSSHHYSSHPPPPPDHH 258


>UniRef50_A7BL13 Cluster: Putative uncharacterized protein; n=1;
           Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
           Beggiatoa sp. SS
          Length = 349

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 338 TQFLRECHMESGGEASTIFFHGSSASGIQVWY 243
           T  LR+ H+E G EA   FF GS  +G   W+
Sbjct: 103 TDSLRKIHVEIGNEAWNTFFQGSGFNGADYWH 134


>UniRef50_Q7S880 Cluster: Predicted protein; n=1; Neurospora
           crassa|Rep: Predicted protein - Neurospora crassa
          Length = 667

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 426 YDCQFEGGRLHDVIDALCDQVLPD 355
           +DC+  GGRL DV+D +C Q + D
Sbjct: 316 WDCRIVGGRLSDVVDPVCGQCMYD 339


>UniRef50_UPI0000660420 Cluster: Homolog of Homo sapiens "RING
           finger protein 14; n=1; Takifugu rubripes|Rep: Homolog
           of Homo sapiens "RING finger protein 14 - Takifugu
           rubripes
          Length = 453

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +3

Query: 462 NVRAPENASGICAGRATSYCVSLLTDDEARRCACWQSGPSGPPAPLRDLLLYGD 623
           +V+ PE     C G  + +C  L+T+   R   C Q+  S  P P +   L G+
Sbjct: 236 SVKLPECGHIFCRGCLSEFCKVLITEGNVRGVTCPQAECSSAPTPAQVRTLVGE 289


>UniRef50_Q68CZ2 Cluster: Tensin-3; n=33; Euteleostomi|Rep: Tensin-3
           - Homo sapiens (Human)
          Length = 1445

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +3

Query: 114 RRGGSGQVSYKLEQALNLWGESSMGVSCPERQGCSAEVSGTRHV 245
           RRG S Q   +L+Q L+ +G    G S  E     ++ SGTRHV
Sbjct: 414 RRGLSAQEKAELDQLLSGFGLEDPGSSLKEMTDARSKYSGTRHV 457


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 636,798,070
Number of Sequences: 1657284
Number of extensions: 13119668
Number of successful extensions: 34960
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 33644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34951
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)