Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20434
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1174 + 34692085-34692283,34693336-34693622,34693995-34694504     34   0.091
12_01_0346 + 2652181-2653566                                           29   4.5  
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973...    28   6.0  
04_01_0100 + 1034057-1034308,1034962-1035078,1035152-1035382,103...    28   7.9  
03_04_0117 + 17411064-17411955,17412111-17413543                       28   7.9  
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216     28   7.9  

>02_05_1174 + 34692085-34692283,34693336-34693622,34693995-34694504
          Length = 331

 Score = 34.3 bits (75), Expect = 0.091
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = -2

Query: 280 SMGRPLQVFKCGTCRVPDTSAEQP*RSGHDTPILDSPHKLSACSSL--YET*PLPPRRRH 107
           +M R     K G C    +S+  P  +GH +P    P  L+ACSS   Y + P PP   H
Sbjct: 195 AMARSAAAIKAGGCYSNSSSSHDPAAAGHHSP-PPFPASLAACSSSHHYSSHPPPPPDHH 253


>12_01_0346 + 2652181-2653566
          Length = 461

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/65 (26%), Positives = 26/65 (40%)
 Frame = +1

Query: 304 PDSIWHSLRNCVAYQAGVWQNLITKGIDDVMQPAAFKLAIVLRHTPTEDCAKLMSELLKT 483
           P  + H L   +A   G   + +    D+   P  F+L I      T D   L+ E  K 
Sbjct: 36  PPRVPHRLGTVIAVDLGNTNSCVAGYGDEADAPPLFRLCIPTSVAFTGDGDALVGEAAKN 95

Query: 484 HPVSV 498
           HP ++
Sbjct: 96  HPAAI 100


>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
            21997494-21997838,21998323-21999240,21999312-21999640,
            21999709-21999832,21999901-22000071,22000188-22001648,
            22002647-22002910,22003866-22004189
          Length = 1831

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -3

Query: 294  FYDFLPWVVRFRYSSV-VHAAYQIPPP 217
            FY F   V  FRY+S+ VH+ Y +PPP
Sbjct: 1049 FYGFGEMVACFRYASIKVHSVY-LPPP 1074


>04_01_0100 +
           1034057-1034308,1034962-1035078,1035152-1035382,
           1038200-1038455,1038551-1038807,1038978-1039250,
           1039617-1039898,1040045-1040165,1040351-1040520,
           1040613-1040711
          Length = 685

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 94  SCIFCDVGAAEAVRSRINWNKRSICGEN 177
           +C +  VG  + +  R+NW   S CG +
Sbjct: 612 TCRYIPVGLLDVIPQRLNWRPPSYCGRD 639


>03_04_0117 + 17411064-17411955,17412111-17413543
          Length = 774

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 522 VSLLTDDEARRCACWQSGPSGPPAPLRDLLLYG 620
           +SL  + + R C+      S PP  LR LLLYG
Sbjct: 685 LSLSIETDRRTCSLPLDFSSSPPLLLRSLLLYG 717


>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
          Length = 1030

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +2

Query: 56  KRKQRNRPTEPSAVVYFVTSARRKRSGLV*TGTSAQFVGRIEYGSVMP 199
           K    ++P++P+A V + TS+  + S +  +  S++ V  +   SVMP
Sbjct: 43  KENSASKPSKPTAAVRWSTSSIPRASRIPSSVESSKLVSTLRASSVMP 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,599,818
Number of Sequences: 37544
Number of extensions: 410291
Number of successful extensions: 1112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)