Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20434
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00043-6|AAC77507.1|  487|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AF025458-5|AAB70974.1|  298|Caenorhabditis elegans Squat protein...    28   5.3  
Z66511-6|CAA91318.1|  343|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>U00043-6|AAC77507.1|  487|Caenorhabditis elegans Hypothetical
           protein T26A5.4 protein.
          Length = 487

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/56 (33%), Positives = 24/56 (42%)
 Frame = +1

Query: 274 PWKKIVEASPPDSIWHSLRNCVAYQAGVWQNLITKGIDDVMQPAAFKLAIVLRHTP 441
           P  KIV   PP     SL   V     ++ N IT  +    Q +AF L I+L   P
Sbjct: 61  PRIKIVGIPPPPDFMDSLPAFVQLPLKLFWNFITLFLALAFQTSAFNLRIILMQNP 116


>AF025458-5|AAB70974.1|  298|Caenorhabditis elegans Squat protein 2
           protein.
          Length = 298

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +3

Query: 507 ATSYCVSLLTDDEARRCACWQSGPSGPPAPLRD 605
           A  Y   +   + A  C   Q GP+GPP P  D
Sbjct: 88  AGGYGAPVTNSEPAPTCCSCQQGPAGPPGPPGD 120


>Z66511-6|CAA91318.1|  343|Caenorhabditis elegans Hypothetical
           protein F07A11.5 protein.
          Length = 343

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 367 LITKGIDDVMQPAAFKLAIVLRHTPTED--CAKLMSELLKTHPVS 495
           L +KG+DDV   A  K+  V   T   D  C  L + L+  HP+S
Sbjct: 262 LASKGVDDVEHTAVIKVDAV-DTTGAGDCFCGSLAAHLVAGHPIS 305


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,642,006
Number of Sequences: 27780
Number of extensions: 309558
Number of successful extensions: 890
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)