Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20434
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   3.5  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          22   6.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   6.2  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   6.2  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   6.2  

>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 378 GHR*RHAAGRLQTGN 422
           GHR RH+   L TGN
Sbjct: 192 GHRQRHSTIHLSTGN 206


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +1

Query: 73  PPNRTVSSCIFCD 111
           PPNRT++S ++ +
Sbjct: 85  PPNRTINSVVYIE 97


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 175 SPHKLSACSSLYET*PLPPRRRHKI 101
           SP  L     + ET  LPPR+R K+
Sbjct: 448 SPDPLDLAIPVRETLILPPRKRCKM 472


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +1

Query: 73  PPNRTVSSCIFCD 111
           PPNRT++S ++ +
Sbjct: 206 PPNRTINSVVYIE 218


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 328 LGNAIWNPVVKLLRFSSMGRPL 263
           +G AI N  +   R+S++ RPL
Sbjct: 132 IGAAITNAAIAYDRYSTIARPL 153


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,545
Number of Sequences: 438
Number of extensions: 3932
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)