Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20434
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39500.1 68418.m04783 pattern formation protein, putative sim...    27   8.6  
At4g28570.1 68417.m04087 alcohol oxidase-related low similarity ...    27   8.6  

>At5g39500.1 68418.m04783 pattern formation protein, putative
           similar to SP|Q42510 Pattern formation protein EMB30
           {Arabidopsis thaliana}; contains Pfam profile PF01369:
           Sec7 domain
          Length = 1443

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 67  TKPPNRTVSSCIFCDVGAAEAV-RSRINWNKRSICGENRVWECHALSVKVARRR 225
           +KP    V+S I  ++GA  AV R  + W  R I  ++++      S+K  R++
Sbjct: 22  SKPSKGAVASMINSEIGAVLAVMRRNVRWGVRYIADDDQLEHSLIHSLKELRKQ 75


>At4g28570.1 68417.m04087 alcohol oxidase-related low similarity to
           long chain fatty alcohol oxidase from Candida cloacae
           [GI:6983581], Candida tropicalis [GI:6983594]
          Length = 748

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 398 CMTSSMPFVIKFCQTPA**ATQFLRECHMESG 303
           C+  S PFV+KF Q P       LR    +SG
Sbjct: 108 CLDKSWPFVLKFSQLPLDKREAILRNWSRQSG 139


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,884,767
Number of Sequences: 28952
Number of extensions: 293579
Number of successful extensions: 746
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)