Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20432
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    27   2.8  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    26   6.6  

>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +3

Query: 234 SLKSVSA*ELHHLRFEESSRPRYPAA--HLHVHGIPSSGSEFAADPTAHQQP 383
           SL S    E  HLR +ES   + P+    L    +PS  S  +   T HQQP
Sbjct: 759 SLPSQQTTETKHLR-KESIPSKQPSGGQQLRQESLPSQQSSESKQSTQHQQP 809


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 169 HHVVVHNSLPTYNCVLGEINLELNFNGVLVLALQ 68
           H  V+ NS+  ++  +    +ELN++ V V  L+
Sbjct: 239 HESVLRNSMDDFHTAISSSEIELNYSNVSVSTLK 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,679,066
Number of Sequences: 5004
Number of extensions: 50981
Number of successful extensions: 104
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)