Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20432
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51778| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=0.31)            28   7.0  
SB_24921| Best HMM Match : Pyr_redox (HMM E-Value=4.7e-15)             28   7.0  
SB_20561| Best HMM Match : 7tm_1 (HMM E-Value=0.2)                     28   7.0  

>SB_51778| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=0.31)
          Length = 239

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 481 IFSTKIIVFFRMATLDYPRLVQVKHLEIL 567
           +  T I+V   MA  ++  LV VKHLE++
Sbjct: 74  VLPTLIVVLVSMAVFNFTALVIVKHLEVV 102


>SB_24921| Best HMM Match : Pyr_redox (HMM E-Value=4.7e-15)
          Length = 256

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 4/25 (16%)
 Frame = +1

Query: 124 EHSYTLGGCCA-QQHD---VPPRAR 186
           +H Y +G CCA QQ D   VPPRA+
Sbjct: 222 DHIYVIGDCCACQQPDGSWVPPRAQ 246


>SB_20561| Best HMM Match : 7tm_1 (HMM E-Value=0.2)
          Length = 310

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 481 IFSTKIIVFFRMATLDYPRLVQVKHLEIL 567
           +  T I+V   MA  ++  LV VKHLE++
Sbjct: 74  VLPTLIVVLVSMAVFNFTALVIVKHLEVV 102


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,761,017
Number of Sequences: 59808
Number of extensions: 380624
Number of successful extensions: 966
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)