Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20431
(785 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35532| Best HMM Match : Peptidase_S49 (HMM E-Value=2.7) 31 1.1
SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_48596| Best HMM Match : Filament (HMM E-Value=0.23) 30 2.4
SB_56545| Best HMM Match : Exonuc_X-T (HMM E-Value=1.2e-09) 29 4.3
SB_37350| Best HMM Match : MFS_1 (HMM E-Value=4.9e-07) 29 5.6
SB_49487| Best HMM Match : Zip (HMM E-Value=0.014) 28 7.5
SB_39673| Best HMM Match : TRAP-delta (HMM E-Value=1.2e-32) 28 9.9
SB_44903| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_2637| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
>SB_35532| Best HMM Match : Peptidase_S49 (HMM E-Value=2.7)
Length = 149
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Frame = +1
Query: 49 RSSIPDKVPEAEDKPLNVVDNLSSEQELIDQ-ANTIKDIDNSLRANKKEVIDIPVKVIVE 225
+ SIP P+ + K LN V+N++ +E ++ A+ + D+ N + + K E V V+
Sbjct: 72 KDSIPLAKPQKQQKVLNAVENINWPEEKKERFADVLNDVHN-ISSEKSEEEGDGVVFFVK 130
Query: 226 EIKPSLKSDLKTLK 267
+K + +++L+ LK
Sbjct: 131 SLKWA-RNELRILK 143
>SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1040
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/84 (26%), Positives = 46/84 (54%)
Frame = +1
Query: 34 RARRTRSSIPDKVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVK 213
R R+ ++ +KV E+ D + ++N EL +Q IK+ + L+ +KE+ + K
Sbjct: 593 RDRQIQNLSLEKVNESRDDEITELEN-----ELEEQREIIKENEEKLKEKEKEIEKLKKK 647
Query: 214 VIVEEIKPSLKSDLKTLKCRMKMR 285
+I E+ LK D++T + +++ +
Sbjct: 648 II--ELSDKLK-DMETSRNKVETK 668
>SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +3
Query: 318 PGPPQHQEHETQNPEHHEDAEKIVSSVKN---DINTAEIALRQGFQEVSDGIGKWYARTE 488
P PP H + E H E E+I S K+ D+ A+ L++ +++ + +G Y R
Sbjct: 282 PNPPPHLDEEKIKQLHEELKEEIKSMAKDSEKDLEDAKKDLKEEIEQIKEEVG--YLRYM 339
Query: 489 QINEL 503
+ +L
Sbjct: 340 EAKQL 344
>SB_48596| Best HMM Match : Filament (HMM E-Value=0.23)
Length = 458
Score = 29.9 bits (64), Expect = 2.4
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Frame = +1
Query: 37 ARRTRSSIPDKVPEAEDKPLNVVDNL--SSEQELIDQANTIKDIDNSLRANKKEVIDIPV 210
A R+R D +A L + + SS ++LID I+D ++S +KE + +
Sbjct: 124 AMRSRGDTTDAEIKALKTQLKMAEETRDSSRRDLIDAHRKIRDAEDSKETLRKENLHVKR 183
Query: 211 KV-IVEEIKPSLKSDLKTLKCRMKM 282
+V +E K SL+ + L+ ++K+
Sbjct: 184 QVKDLEMEKQSLEKSVSDLREKVKL 208
>SB_56545| Best HMM Match : Exonuc_X-T (HMM E-Value=1.2e-09)
Length = 416
Score = 29.1 bits (62), Expect = 4.3
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Frame = +1
Query: 145 NTIKDIDNS--LRANKKEVIDIPVKVIVEEIKPSLKSDLKTLKCRMKMRKSRGL*SI*EI 318
N +K + +S +++ K + D+PV +EE D ++ K RGL ++ +
Sbjct: 315 NFMKQMKHSQEVKSRKDTLCDLPVSSSMEEKIAKSGMDFNKMRSVYKEGGERGLLTVLAL 374
Query: 319 PGPRS---IKSTKHRILNTTKMLKK 384
P S +K +K R+ T +++ K
Sbjct: 375 PPQYSQLNVKGSKPRVTKTIRIINK 399
>SB_37350| Best HMM Match : MFS_1 (HMM E-Value=4.9e-07)
Length = 349
Score = 28.7 bits (61), Expect = 5.6
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = -1
Query: 230 ISSTITLTGMSMTSFLFARRLL-SMSLMVLAWSMSSCSLDKLSTTFKGLSSASGTLSGME 54
IS ++ GM+ SFLFA LL + + + S L LS GL + +G+ + ++
Sbjct: 255 ISRSVVRKGMTFLSFLFAATLLVPVGFLNCSQQNISVLLLTLSCGSLGLYAPTGSANSVD 314
Query: 53 LRVRRARI*LA 21
L R A + +A
Sbjct: 315 LSPRFAGVTMA 325
>SB_49487| Best HMM Match : Zip (HMM E-Value=0.014)
Length = 510
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +3
Query: 333 HQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGI 464
HQ H + HH D +KI S + + GF +SDG+
Sbjct: 73 HQNHHDHHHHHHHD-KKIDSKTSIATVAWMVIVSDGFHNLSDGL 115
>SB_39673| Best HMM Match : TRAP-delta (HMM E-Value=1.2e-32)
Length = 504
Score = 27.9 bits (59), Expect = 9.9
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +2
Query: 524 QENFGAQIQKLNETLHFIKPADTIAAPSVEETQNKASFETIESGLK--SLETNFNSGLNQ 697
QEN QI LNE L + T A E QN T + +K S+ ++ NS
Sbjct: 134 QENAQKQINHLNELLTTLTDIITSAKEDWEGEQNSVGLLTCGAQVKAPSVNSSSNSPDES 193
Query: 698 LSEGIQIVAT 727
+ E I + T
Sbjct: 194 VIEAINVFVT 203
>SB_44903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1281
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 620 QNKASFETIESGLKSLET-NFNSGLNQLSEGIQIVATFKADGEAAAESSVPPCSKH 784
+NK S T S K E + + + +E Q+V A+ + A E VP C KH
Sbjct: 767 ENKLSSYTDNSQHKGFELPSTDHSACRATEHAQVVEPSHANMQVAGEEHVPTCRKH 822
>SB_2637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 540 APKFSWKCCKLPGAR*FARYERTIFQYRLTLPGSLDE 430
AP+ WKC KL G R ++ F++ L LDE
Sbjct: 74 APEQFWKCFKLWGQPVNVREQQDAFEFFCNLTDQLDE 110
>SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 540 APKFSWKCCKLPGAR*FARYERTIFQYRLTLPGSLDE 430
AP+ WKC KL G R ++ F++ L LDE
Sbjct: 66 APEQFWKCFKLWGQPVNVREQQDAFEFFCNLTDQLDE 102
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,429,793
Number of Sequences: 59808
Number of extensions: 375879
Number of successful extensions: 1364
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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