Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20431
         (785 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61948-4|AAB03146.1|  316|Caenorhabditis elegans Hypothetical pr...    31   0.93 
Z66522-7|CAA91409.2|  472|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z66520-13|CAA91392.2|  472|Caenorhabditis elegans Hypothetical p...    29   2.9  
Z70306-3|CAA94325.1|  318|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z83223-4|CAB05716.2|  534|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z71180-3|CAA94892.2|  763|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U61947-10|AAB03132.1|  932|Caenorhabditis elegans Kinesin-like p...    28   6.6  
AY211948-1|AAO34669.1|  932|Caenorhabditis elegans kinesin-like ...    28   6.6  
AL117193-1|CAB54981.1|  767|Caenorhabditis elegans Hypothetical ...    28   6.6  
AL021474-7|CAA16311.2|  763|Caenorhabditis elegans Hypothetical ...    28   6.6  
AB033538-1|BAB19356.2|  930|Caenorhabditis elegans kinesin like ...    28   6.6  
Z74032-8|CAA98462.3|  325|Caenorhabditis elegans Hypothetical pr...    28   8.7  
AF003388-4|AAB54269.1| 1150|Caenorhabditis elegans Hypothetical ...    28   8.7  

>U61948-4|AAB03146.1|  316|Caenorhabditis elegans Hypothetical
           protein C46A5.6 protein.
          Length = 316

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = +1

Query: 430 FVK-ASRKCQTVLENGTLVPSKLTSSRQLATFPRKFRRSDTKV 555
           F+K A R+  TVLE  T  P+K T   QL+   RKF+R+DT+V
Sbjct: 66  FLKVAKRRSSTVLETAT--PAK-TPKIQLSERRRKFQRNDTEV 105


>Z66522-7|CAA91409.2|  472|Caenorhabditis elegans Hypothetical
           protein F14E5.1 protein.
          Length = 472

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = -1

Query: 266 FNVFKSLFNDGLISSTITLTGMSMTSFLFARRLLSMSLMVLAWSMSSCSLDKLSTTFKGL 87
           F   K LF +  +   + L+  ++T+ +    LL  S   L  +     + + STT  GL
Sbjct: 257 FQKMKELFTERHLRMALILSVSALTNTVGLWALLLSSTFFLENANVESEIAEWSTTAMGL 316

Query: 86  SSASGTLSG 60
           +  SGT++G
Sbjct: 317 AYVSGTITG 325


>Z66520-13|CAA91392.2|  472|Caenorhabditis elegans Hypothetical
           protein F14E5.1 protein.
          Length = 472

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = -1

Query: 266 FNVFKSLFNDGLISSTITLTGMSMTSFLFARRLLSMSLMVLAWSMSSCSLDKLSTTFKGL 87
           F   K LF +  +   + L+  ++T+ +    LL  S   L  +     + + STT  GL
Sbjct: 257 FQKMKELFTERHLRMALILSVSALTNTVGLWALLLSSTFFLENANVESEIAEWSTTAMGL 316

Query: 86  SSASGTLSG 60
           +  SGT++G
Sbjct: 317 AYVSGTITG 325


>Z70306-3|CAA94325.1|  318|Caenorhabditis elegans Hypothetical
           protein C06G8.4 protein.
          Length = 318

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -1

Query: 287 FLIFIRHFNVFKSLFNDGLISSTITLT--GMSMTSFLFARRLLSMSLMVLAWSMSSCSL 117
           FL ++  F   K++    L+   ITLT  G  +T FL  +R++     +L  S   CSL
Sbjct: 25  FLCYLAIFQSPKAIRTYSLVLINITLTNVGACVTGFLLDQRIIQSGKSMLYVSYGYCSL 83


>Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical
           protein D2013.7 protein.
          Length = 294

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +2

Query: 581 PADTIAAPSVEETQNKASFE-TIESGLKSLETNFNSGLNQLSEGIQIVATFKADGEAAAE 757
           P + +A   +E+  +    E T+ESGL+ LET+    +  L   +  V     +GE   +
Sbjct: 178 PGELVAMQLIEKALDSRRREATLESGLEQLETSTAQMIEWLERMLHYVEDVNKNGEKPGD 237

Query: 758 SSV 766
           + +
Sbjct: 238 AQI 240


>Z83223-4|CAB05716.2|  534|Caenorhabditis elegans Hypothetical
           protein E01G4.4 protein.
          Length = 534

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 321 GPPQHQEHETQNPEHHEDAEKIVSSVKN 404
           GPP HQ+H  Q  +H+  A    SS  N
Sbjct: 133 GPPVHQQHYQQQQQHYGAATSAPSSSYN 160


>Z71180-3|CAA94892.2|  763|Caenorhabditis elegans Hypothetical
           protein F22E12.1 protein.
          Length = 763

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 291 KRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQ 437
           +RP V +  P PP  Q   + N  +H +   +V+  K+ ++  E ALR+
Sbjct: 378 QRPPVQMPPPPPPPQQNSPSVNENYHPE---LVNQFKSHLDEHEKALRR 423


>U61947-10|AAB03132.1|  932|Caenorhabditis elegans Kinesin-like
            protein protein 18 protein.
          Length = 932

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
 Frame = +2

Query: 521  FQENFGAQIQKLNETLHFIKPADTIAAPSVEETQNKASFETIES--GLKSLETN-FNSGL 691
            F+E     ++K  +T+     A+      V E +N+   ETIES     S +T   N+GL
Sbjct: 818  FKEKLSVSLKKQEDTIRRQSLAENQGKLEVMENKNRVLSETIESLQSQHSQDTEVINAGL 877

Query: 692  NQLSEGIQIVATFKADGEAAAES 760
                + +  V   + + +A  E+
Sbjct: 878  RTRGDRVGYVDKLRVEKKALEET 900


>AY211948-1|AAO34669.1|  932|Caenorhabditis elegans kinesin-like
            protein-18 protein.
          Length = 932

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
 Frame = +2

Query: 521  FQENFGAQIQKLNETLHFIKPADTIAAPSVEETQNKASFETIES--GLKSLETN-FNSGL 691
            F+E     ++K  +T+     A+      V E +N+   ETIES     S +T   N+GL
Sbjct: 818  FKEKLSVSLKKQEDTIRRQSLAENQGKLEVMENKNRVLSETIESLQSQHSQDTEVINAGL 877

Query: 692  NQLSEGIQIVATFKADGEAAAES 760
                + +  V   + + +A  E+
Sbjct: 878  RTRGDRVGYVDKLRVEKKALEET 900


>AL117193-1|CAB54981.1|  767|Caenorhabditis elegans Hypothetical
           protein Y105C5A.1 protein.
          Length = 767

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 593 IAAPSVEETQNKASFETIESGLKSLETNFNSGLNQLSEG 709
           +  PS + T+NK     I+   + L +NFN+G+  +S G
Sbjct: 215 VVLPSRKSTRNKKDMNQIKED-EELVSNFNNGIGVISRG 252


>AL021474-7|CAA16311.2|  763|Caenorhabditis elegans Hypothetical
           protein F22E12.1 protein.
          Length = 763

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 291 KRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQ 437
           +RP V +  P PP  Q   + N  +H +   +V+  K+ ++  E ALR+
Sbjct: 378 QRPPVQMPPPPPPPQQNSPSVNENYHPE---LVNQFKSHLDEHEKALRR 423


>AB033538-1|BAB19356.2|  930|Caenorhabditis elegans kinesin like
            protein KLP-18 protein.
          Length = 930

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
 Frame = +2

Query: 521  FQENFGAQIQKLNETLHFIKPADTIAAPSVEETQNKASFETIES--GLKSLETN-FNSGL 691
            F+E     ++K  +T+     A+      V E +N+   ETIES     S +T   N+GL
Sbjct: 816  FKEKLSVSLKKQEDTIRRQSLAENQGKLEVMENKNRVLSETIESLQSQHSQDTEVINAGL 875

Query: 692  NQLSEGIQIVATFKADGEAAAES 760
                + +  V   + + +A  E+
Sbjct: 876  RTRGDRVGYVDKLRVEKKALEET 898


>Z74032-8|CAA98462.3|  325|Caenorhabditis elegans Hypothetical
           protein F35B12.1 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 366 GVQDSVFRALDAAGARDFLNRLEAS*FPHFHPALQRFQIT 247
           G  +S++  L   G    LNR  A  FP ++P +  F+IT
Sbjct: 93  GFSNSLYSGLQYTGVYIALNRFCAMFFPTYYPKIFDFKIT 132


>AF003388-4|AAB54269.1| 1150|Caenorhabditis elegans Hypothetical
           protein R10F2.6 protein.
          Length = 1150

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = +3

Query: 330 QHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQA 509
           +HQ+HE Q  +  E+AEK +  +K D+   EI  +     V + + K   R E      A
Sbjct: 567 EHQKHEDQT-DKSEEAEKKM-KIKADLAAKEIWDKNMEHNVDEILMKRVNRVEMCRIQMA 624

Query: 510 ACNISKKI 533
             N+ +K+
Sbjct: 625 LQNLDQKL 632


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,275,076
Number of Sequences: 27780
Number of extensions: 296398
Number of successful extensions: 1363
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1363
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)