Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20431
         (785 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    25   0.80 
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    25   0.80 
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    25   0.80 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   4.3  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   4.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   4.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   5.6  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   7.4  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.8  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -1

Query: 140 WSMSSCSLDKLSTTFKGLSSASGTLSGMELRV 45
           W+M+  + D+ +   KGLS    +++G  +R+
Sbjct: 141 WTMTMIAFDRYNVIVKGLSGKPLSINGALIRI 172


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -1

Query: 140 WSMSSCSLDKLSTTFKGLSSASGTLSGMELRV 45
           W+M+  + D+ +   KGLS    +++G  +R+
Sbjct: 107 WTMTMIAFDRYNVIVKGLSGKPLSINGALIRI 138


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -1

Query: 140 WSMSSCSLDKLSTTFKGLSSASGTLSGMELRV 45
           W+M+  + D+ +   KGLS    +++G  +R+
Sbjct: 17  WTMTMIAFDRYNVIVKGLSGKPLSINGALIRI 48


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +2

Query: 518 HFQENFGAQIQKLNETLHFIKPADTIAAPSVEETQNKAS 634
           H  +  G     LN++LHF++ + +    SV E  ++++
Sbjct: 20  HILDTCGRDTYALNQSLHFVRASLSNLDMSVLECADRSA 58


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = +1

Query: 82  EDKPLNVVDNLSSEQELIDQANTIKDIDNSL 174
           E  P+ +++NL +  E ID+    ++   S+
Sbjct: 333 ETMPMELIENLRNHPEYIDETRNYQECKCSI 363


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +2

Query: 518 HFQENFGAQIQKLNETLHFIKPADTIAAPSVEETQNKAS 634
           H  +  G     LN++LHF++ + +    SV E  ++++
Sbjct: 110 HILDTCGRDTYALNQSLHFVRASLSNLDMSVLECADRSA 148


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 684 AVLISYLKVFKLWLRSKPTERL 749
           AV +  L +  LWL S+ TER+
Sbjct: 263 AVTMMLLTLTVLWLDSRSTERM 284


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 6/25 (24%), Positives = 15/25 (60%)
 Frame = +3

Query: 675 ISIAVLISYLKVFKLWLRSKPTERL 749
           +++ +++  + +  LWL    TER+
Sbjct: 251 VTLTIVLMTMTLMTLWLEPSSTERM 275


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/39 (20%), Positives = 23/39 (58%)
 Frame = +1

Query: 394 PSKMTLTQRKSLFVKASRKCQTVLENGTLVPSKLTSSRQ 510
           P  + +  R++L +   ++C+ +LE+  +  + L +S++
Sbjct: 451 PLDLAIPVRETLILPPRKRCKMILESMEIERNGLIASQR 489


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,683
Number of Sequences: 438
Number of extensions: 3540
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)