Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20431
         (785 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62860.1 68414.m07098 pentatricopeptide (PPR) repeat-containi...    33   0.28 
At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containi...    31   0.66 
At5g65910.1 68418.m08296 BSD domain-containing protein contains ...    31   0.87 
At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contai...    31   0.87 
At1g51070.1 68414.m05741 basic helix-loop-helix (bHLH) family pr...    30   2.0  
At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family pr...    29   4.6  
At1g12380.1 68414.m01431 expressed protein                             29   4.6  
At1g03830.1 68414.m00364 guanylate-binding family protein contai...    29   4.6  
At3g61390.2 68416.m06872 U-box domain-containing protein several...    28   6.1  
At5g01020.1 68418.m00004 protein kinase family protein contains ...    28   8.1  
At2g45560.2 68415.m05666 cytochrome P450 family protein                28   8.1  
At2g45560.1 68415.m05665 cytochrome P450 family protein                28   8.1  
At2g40435.1 68415.m04988 expressed protein                             28   8.1  
At2g28590.1 68415.m03474 protein kinase family protein contains ...    28   8.1  

>At1g62860.1 68414.m07098 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 534

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = -1

Query: 278 FIRHFNVFKSLFNDGLISSTITLTGMSMTSFLFARRLLSMSLMVLAWSMSSCSLD--KLS 105
           F+R  +++  +   G+I ST+T   M +  F    RL     MV +     CS D    S
Sbjct: 372 FLRAEDIYLEMLCKGIIPSTVTYNSM-VDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFS 430

Query: 104 TTFKGLSSASGTLSGMEL 51
           T  KG   A     G+EL
Sbjct: 431 TLIKGYCKAGRVDDGLEL 448


>At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 452

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +3

Query: 348 TQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYART 485
           T  P HH D  + VS +K+++ T   + ++ FQ V D  G+W  RT
Sbjct: 20  TSLPAHHTDLVQRVSILKDELLTIGNS-KEKFQNVLDQKGQWLFRT 64


>At5g65910.1 68418.m08296 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 432

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +3

Query: 309 LRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGI 464
           L  P      +   Q P+H E+ E +++ +KND        R G  ++S  +
Sbjct: 64  LSQPSSSPDLQERNQTPDHPEEDEDLIAGIKNDFAEIGGRFRTGISKLSGNL 115


>At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contains
           Pfam profile: PF00628: PHD-finger
          Length = 704

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 505 WSSLICSVRAYHFPIPSDTSW 443
           WS+   S R YHF IP DT W
Sbjct: 100 WSNHFVSKRKYHFIIPIDTEW 120


>At1g51070.1 68414.m05741 basic helix-loop-helix (bHLH) family
           protein similar to bHLH transcription factor GI:3757520
           from [Arabidopsis thaliana]
          Length = 226

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 22/96 (22%), Positives = 48/96 (50%)
 Frame = +1

Query: 61  PDKVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPS 240
           P + P+  DK   + D +    +  D+A  +KD+++SL+   KE+ D   K  + + K  
Sbjct: 95  PGRTPKT-DKVAIINDAIRMVNQARDEAQKLKDLNSSLQEKIKELKD--EKNELRDEKQK 151

Query: 241 LKSDLKTLKCRMKMRKSRGL*SI*EIPGPRSIKSTK 348
           LK + + +  ++K  K++       +P P+++   +
Sbjct: 152 LKVEKERIDQQLKAIKTQPQPQPCFLPNPQTLSQAQ 187


>At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 284

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = +1

Query: 85  DKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLKTL 264
           DK   + D +   +EL  + N +K    +L    +E+     K  + E K SLKSD++ L
Sbjct: 40  DKATILTDTVQLLKELTSEVNKLKSEYTALTDESRELTQ--EKNDLREEKTSLKSDIENL 97

Query: 265 KCRMKMR 285
             + + R
Sbjct: 98  NLQYQQR 104


>At1g12380.1 68414.m01431 expressed protein
          Length = 793

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/68 (25%), Positives = 35/68 (51%)
 Frame = +3

Query: 297 PLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWY 476
           PL  +R+         +  +PE  +D +K+++ + +  + A IAL +  +  ++G+   Y
Sbjct: 609 PLYLIRDSSGKYLPPFKCLSPEQEKDVDKLITRLVSR-DEAHIALMELMKWRTEGLDPMY 667

Query: 477 ARTEQINE 500
           AR  Q+ E
Sbjct: 668 ARAVQMKE 675


>At1g03830.1 68414.m00364 guanylate-binding family protein contains
           Pfam domains PF02263: Guanylate-binding protein,
           N-terminal domain and PF02841: Guanylate-binding
           protein, C-terminal domain
          Length = 991

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/64 (26%), Positives = 33/64 (51%)
 Frame = +1

Query: 100 VVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLKTLKCRMK 279
           V + +++ +E + QA+T +D    LRA    V+D   K+I E+       + +    R +
Sbjct: 536 VTEKIAAMEEKLKQASTTED---GLRAEFSRVLDEKEKIITEKAAKLATLEQQLASTRAE 592

Query: 280 MRKS 291
           ++KS
Sbjct: 593 LKKS 596


>At3g61390.2 68416.m06872 U-box domain-containing protein several
           hypothetical proteins - Arabidopsis thaliana
          Length = 435

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/58 (18%), Positives = 23/58 (39%)
 Frame = +3

Query: 330 QHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINEL 503
           + +E E     H E  +  +  + +DI         GF    + I +W+ R  + + +
Sbjct: 339 KREEEEASTSNHREPPQYFICPITHDIMEDPHVAADGFTYEGEAISRWFERGHETSPM 396


>At5g01020.1 68418.m00004 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 410

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = -3

Query: 762 ELSAAASPSALNVATI*IPSDS*LRPLLKFVSKDLRPDSIVSKEALFCVSSTEGAAMVSA 583
           + S  A+  A ++A   +  +   RPL+  V + L P        + C ++T GAA    
Sbjct: 312 QYSVRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQCTGDALIPCATTTAGAAFAMG 371

Query: 582 GL 577
           G+
Sbjct: 372 GV 373


>At2g45560.2 68415.m05666 cytochrome P450 family protein
          Length = 322

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 372 LRGVQDSVFRALDAAGARDFLNRLEAS*FPHFHPALQRFQITLQR 238
           + GVQD+V   +DAAG  D  N      F      ++ F++  +R
Sbjct: 208 INGVQDTVISVMDAAGTPDAANYFPFLRFLDLQGNVKTFKVCTER 252


>At2g45560.1 68415.m05665 cytochrome P450 family protein
          Length = 512

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 372 LRGVQDSVFRALDAAGARDFLNRLEAS*FPHFHPALQRFQITLQR 238
           + GVQD+V   +DAAG  D  N      F      ++ F++  +R
Sbjct: 208 INGVQDTVISVMDAAGTPDAANYFPFLRFLDLQGNVKTFKVCTER 252


>At2g40435.1 68415.m04988 expressed protein
          Length = 158

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/66 (28%), Positives = 27/66 (40%)
 Frame = +2

Query: 545 IQKLNETLHFIKPADTIAAPSVEETQNKASFETIESGLKSLETNFNSGLNQLSEGIQIVA 724
           IQKL + +       T    S E T  K    T+E+  K    N  SG NQ    + ++ 
Sbjct: 40  IQKLKQKVERFNQDPTAEQSSSEPTDPKTPMVTVETLDKGFMINVFSGKNQPGMLVSVLE 99

Query: 725 TFKADG 742
            F+  G
Sbjct: 100 AFEDIG 105


>At2g28590.1 68415.m03474 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 424

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = +1

Query: 328 RSIKSTKHRILNTTKMLKKSFLPSKMTLTQRKSLFVKASRKCQTVLENGTLVPSKLTSSR 507
           R+ KS K     TTK     F P K+T+   +    + S  C  V   G +    +T   
Sbjct: 6   RTPKSNKRSDTKTTK--NNDFTPKKLTVNANRDKLTQPSSDCLKVSICGDVSKEIVTKKD 63

Query: 508 QLA 516
           QLA
Sbjct: 64  QLA 66


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,379,211
Number of Sequences: 28952
Number of extensions: 270702
Number of successful extensions: 1066
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)