Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20430
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         56   6e-09
SPAC24B11.13 |hem3|SPAC806.01|hydroxymethylbilane synthase|Schiz...    26   5.5  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    26   5.5  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    26   5.5  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    26   7.3  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   7.3  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.6  
SPAC6B12.13 |||protein phosphatase inhibitor |Schizosaccharomyce...    25   9.6  

>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 56.0 bits (129), Expect = 6e-09
 Identities = 21/40 (52%), Positives = 26/40 (65%)
 Frame = +1

Query: 577 VCGAWLGAVVIPLDWNTPWQQWPIPCYLGAIGGYLLANVL 696
           + GAW GA  IPLDW+ PWQ WPI   +GA  GY  A ++
Sbjct: 459 IIGAWFGAFPIPLDWDRPWQAWPITIVIGAFLGYAFAAIV 498


>SPAC24B11.13 |hem3|SPAC806.01|hydroxymethylbilane
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 336

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
 Frame = +3

Query: 564 CHANR--MRRMAGGCSDTPGLEYSMAAVADSLLPWSYRWLLAG*CI--DSIQSNLNDSGL 731
           C A R  M+R+ GGC+   G++  + A+++S    SYR  L G  +  D +++   ++  
Sbjct: 237 CLAERALMKRLQGGCAIPIGVQTDVLAISNS----SYRISLLGTVLSADGLRAAFGNAEA 292

Query: 732 QISSSQ 749
            +SS +
Sbjct: 293 VVSSEE 298


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 535 DTVVEMLV--NNAMLTVCGAWLGAVVIPLDWNTPWQQWPIPCYL 660
           DT VE+    +N  LT+ G     + +  +W  P ++W + C L
Sbjct: 134 DTSVEVAAADSNDYLTITGRSGRTLKLSKEWKNPSKKWKVGCKL 177


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 8/36 (22%), Positives = 22/36 (61%)
 Frame = +1

Query: 481 FWCGMFYATMFGVKSFARDTVVEMLVNNAMLTVCGA 588
           ++C +F  T+F +       +V+M++++ ++ V G+
Sbjct: 150 YFCSIFVYTVFNISCALPRNIVQMIISHFIIGVAGS 185


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = -2

Query: 534 PGKALHAKHSCIEHSTPE*SMRGNIVSIVKSVDNINVSSCKSNTGAPKSIIPIKKQKLT 358
           P     A+ +  +H  PE S +    +    V+N+N  S    T  P S +PI+   +T
Sbjct: 114 PSANSSAERTSSQHQKPETSSQIGKDNAAP-VENVNEKSTSQETAPPVSTVPIQFGSIT 171


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +3

Query: 66   YRYTKMFAFNTQLELRRITISSLITCIYLPSIVTVISYRGSLYY 197
            + Y+KM     +   R ++I SL  C+   ++ +  +  GS++Y
Sbjct: 1513 HEYSKMLNLGIEASWRSLSIDSLKKCLSKSNLESFEAKLGSIFY 1556


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 99   QLELRRITISSLITCIYLPSIVTVISYRGS 188
            Q  L R   + LIT   +PS+V  +SYRG+
Sbjct: 2458 QSMLDRAGSNMLITYFKIPSVVLRLSYRGT 2487


>SPAC6B12.13 |||protein phosphatase inhibitor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 104

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 664 LQGSKESATAAMEYSSPGVSLQPPAMRRIR 575
           ++ ++ESA+ + E S   + LQP  +RR+R
Sbjct: 18  IESTEESASISHEESENVLHLQPEPVRRVR 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,135,305
Number of Sequences: 5004
Number of extensions: 64140
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)