Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20430
         (811 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0205 + 1621760-1621784,1622079-1622208,1622569-1622635,162...    58   8e-09
10_02_0202 - 6770448-6770561,6771185-6771279,6771638-6771686,677...    56   3e-08
06_01_0590 - 4240260-4240883,4241063-4242238,4242691-4242760,424...    31   1.4  
08_02_0648 - 19694538-19696569,19697151-19697998                       30   2.5  
06_01_0055 + 476204-476388,476481-476543,476684-476800,476920-47...    29   3.3  
05_07_0176 - 28168595-28169806                                         29   4.4  
06_01_0280 - 2056449-2056487,2056613-2056930,2057025-2057171,205...    29   5.8  
04_04_0585 - 26386248-26386271,26386510-26386699,26387363-263874...    29   5.8  

>03_01_0205 +
           1621760-1621784,1622079-1622208,1622569-1622635,
           1622806-1622909,1623099-1623147,1623190-1623290,
           1623623-1623740,1624342-1624455
          Length = 235

 Score = 58.0 bits (134), Expect = 8e-09
 Identities = 24/56 (42%), Positives = 35/56 (62%)
 Frame = +1

Query: 535 DTVVEMLVNNAMLTVCGAWLGAVVIPLDWNTPWQQWPIPCYLGAIGGYLLANVLTV 702
           D+V  M+   A   V GAWLGA  +PLDW  PWQ+WPI    G++ G+L+   +++
Sbjct: 165 DSVDYMISAPAHGAVIGAWLGAWPMPLDWERPWQEWPISVTYGSVAGHLIGMAISL 220


>10_02_0202 -
           6770448-6770561,6771185-6771279,6771638-6771686,
           6771795-6771843,6772035-6772228
          Length = 166

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 20/42 (47%), Positives = 29/42 (69%)
 Frame = +1

Query: 577 VCGAWLGAVVIPLDWNTPWQQWPIPCYLGAIGGYLLANVLTV 702
           V GAWLGA  +PLDW  PWQ+WPI    G++ G+L+   +++
Sbjct: 110 VIGAWLGAWPMPLDWERPWQEWPISVTYGSVAGHLIGMAISL 151


>06_01_0590 -
           4240260-4240883,4241063-4242238,4242691-4242760,
           4243739-4243803
          Length = 644

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +3

Query: 645 DSLLPWSYRWLLAG*CIDSIQS 710
           D+LLPWS +  LA  CIDSI S
Sbjct: 149 DALLPWSEQLKLAARCIDSIAS 170


>08_02_0648 - 19694538-19696569,19697151-19697998
          Length = 959

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 471 SYFILVWNVLCNYVWREELCQGHSGRDASE*CHANRMRRMAGGCS 605
           SYF+L+ +V     W++  C   S  +AS      R++ +A  CS
Sbjct: 283 SYFVLIDDVWSKQAWKDIQCAFPSNNNASRIMMTTRIQDVAKSCS 327


>06_01_0055 +
           476204-476388,476481-476543,476684-476800,476920-477328,
           477448-477638,477706-477871
          Length = 376

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 186 SLYYVGKGSSFYILVLIFIAELLSRFILAPRMIYKERKARP 308
           SL  V        LVL+ + +L +   L P   +KERK+RP
Sbjct: 26  SLVKVAMDGGLNPLVLVTLQQLTAAIFLGPIAYFKERKSRP 66


>05_07_0176 - 28168595-28169806
          Length = 403

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 568 MLTVCGAWLGAVVIPLDWNTPWQQWPIPCYLGAIGG 675
           M  VCGAW  AV + +    P +   +PC L   GG
Sbjct: 32  MAGVCGAWRRAVKVKVATGQPPRPRQLPCLLRPNGG 67


>06_01_0280 -
           2056449-2056487,2056613-2056930,2057025-2057171,
           2057273-2058112,2059044-2059117,2059515-2059647,
           2059804-2059941
          Length = 562

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -2

Query: 531 GKALHAKHSCIEHSTPE*SMRGNIVSIVKSVDNINVSSCKSNTGAPK 391
           G+ L  K  C+  S      R  + SI+ +++++ + SCK    APK
Sbjct: 355 GETLQIKSLCMVRSGYVYHARAELPSIMPNLESLALKSCKETAFAPK 401


>04_04_0585 - 26386248-26386271,26386510-26386699,26387363-26387463,
            26387554-26387685,26387759-26387857,26387956-26388127,
            26388217-26388512,26388601-26388726,26388848-26389062,
            26389154-26389225,26389299-26389368,26389441-26389517,
            26389605-26389923,26390034-26390225,26390321-26390551,
            26390585-26390950,26392251-26392313,26392394-26392456,
            26392544-26392642,26393497-26393523,26394299-26394358,
            26395230-26396147,26396243-26397268
          Length = 1645

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 227  QNIKRRSFAHIVERPSIRYDSHNT 156
            QN+K+R F  ++  P + Y  H+T
Sbjct: 1297 QNVKKRRFDDVINSPDVEYFGHST 1320


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,366,210
Number of Sequences: 37544
Number of extensions: 390328
Number of successful extensions: 874
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)