Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20430
         (811 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54780| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_34466| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_58000| Best HMM Match : MATH (HMM E-Value=1.1e-19)                  28   7.8  

>SB_54780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +3

Query: 117 ITISSLITCIYLPSIV--TVISYRGSLYYVGKGSSFYILVLIFIAELLSRFILAPRMIYK 290
           I ++   TC+ +  +V  T++ +    Y + +    Y+LV + IA+++    + PR I+ 
Sbjct: 7   IGLTVAFTCLVITDLVGNTLVIWVVVRYRMMRTPMNYLLVNLAIADMMFALFITPRFIFN 66

Query: 291 ERKARPVKRKQATSSNRLC 347
                  K  Q T+ + LC
Sbjct: 67  ----HTFKHPQGTAGHYLC 81


>SB_34466| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +1

Query: 55  INSIIDTLKCLRLILN*NYVE*QYQVLL 138
           ++S I+  +CL +I++ NYVE  Y+ L+
Sbjct: 20  VSSAINAFECLPIIIHLNYVEGHYKTLI 47


>SB_58000| Best HMM Match : MATH (HMM E-Value=1.1e-19)
          Length = 1451

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -2

Query: 525 ALHAKHSCIEHSTPE*SMRGNIVSIVKSVDNINVSSCKSNTGAPKSIIPIKKQKLTP 355
           A HA    +E  + + S   N   I  ++ N  V   K++TGA  ++IP+   K TP
Sbjct: 273 ATHAYFVSVELGSVDVSASRNKSMINVTISNRQVK-VKADTGAEANVIPLSYMKATP 328


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,996,136
Number of Sequences: 59808
Number of extensions: 466972
Number of successful extensions: 1153
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)