Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20430
         (811 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    26   0.36 
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    26   0.36 
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    26   0.36 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.4  

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
 Frame = +1

Query: 556 VNNAMLTVCGAWLGAVVIPLDWNTPWQQWP------IPCYLGAIGGYLLANVLTVFKATL 717
           +   + T+ G W+ +  I       W  WP       PC L    GY++ + L  F   L
Sbjct: 150 LKRVLATIAGVWILSGAISSPPLAGWNDWPEELEPGTPCQLTRRQGYVIYSSLGSFFIPL 209

Query: 718 MTAAYKY 738
           +  +  Y
Sbjct: 210 LLMSLVY 216


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
 Frame = +1

Query: 556 VNNAMLTVCGAWLGAVVIPLDWNTPWQQWP------IPCYLGAIGGYLLANVLTVFKATL 717
           +   + T+ G W+ +  I       W  WP       PC L    GY++ + L  F   L
Sbjct: 150 LKRVLATIAGVWILSGAISSPPLAGWNDWPEELEPGTPCQLTRRQGYVIYSSLGSFFIPL 209

Query: 718 MTAAYKY 738
           +  +  Y
Sbjct: 210 LLMSLVY 216


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
 Frame = +1

Query: 556 VNNAMLTVCGAWLGAVVIPLDWNTPWQQWP------IPCYLGAIGGYLLANVLTVFKATL 717
           +   + T+ G W+ +  I       W  WP       PC L    GY++ + L  F   L
Sbjct: 150 LKRVLATIAGVWILSGAISSPPLAGWNDWPEELEPGTPCQLTRRQGYVIYSSLGSFFIPL 209

Query: 718 MTAAYKY 738
           +  +  Y
Sbjct: 210 LLMSLVY 216


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 213 SFYILVLIFIAELLSRFILAPRMIYKERKAR 305
           SFYI + + I      F  A R++ +ER+A+
Sbjct: 210 SFYIPLFVMIQVYYKIFCAARRIVLEERRAQ 240


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,928
Number of Sequences: 438
Number of extensions: 5152
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)