Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20430
         (811 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16040.1 68414.m01925 expressed protein similar To Phosphatid...    57   1e-08
At1g19390.1 68414.m02412 wall-associated kinase, putative simila...    36   0.042
At3g63320.1 68416.m07123 protein phosphatase 2C-related / PP2C-r...    29   2.8  
At4g31820.1 68417.m04522 phototropic-responsive NPH3 family prot...    29   4.8  
At2g35190.1 68415.m04316 novel plant SNARE 11 (NPSN11) contains ...    28   6.4  
At3g24630.1 68416.m03093 hypothetical protein                          28   8.4  

>At1g16040.1 68414.m01925 expressed protein similar To
           Phosphatidylinositol-glycan biosynthesis, class F
           protein (PIG-F). (Mouse) (SP:O09101) [Mus musculus];
           contains six transmembrane domains;
          Length = 226

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 23/47 (48%), Positives = 29/47 (61%)
 Frame = +1

Query: 541 VVEMLVNNAMLTVCGAWLGAVVIPLDWNTPWQQWPIPCYLGAIGGYL 681
           +  ML+  A   + G W GA  +PLDW  PWQ+WPI    GAIGGY+
Sbjct: 160 IEHMLLVPAYGAIIGGWFGAWPMPLDWERPWQEWPICVCYGAIGGYI 206


>At1g19390.1 68414.m02412 wall-associated kinase, putative similar
           to GB:CAB42872 from [Arabidopsis thaliana] (Plant Mol.
           Biol. 39 (6), 1189-1196 (1999))
          Length = 788

 Score = 35.5 bits (78), Expect = 0.042
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = +3

Query: 138 TCIYLPSIVTVISYRGSLYYVGKGSSFYILVLIFIAELLSRFILAPRMIYKERK 299
           TC+ LP     I  +  +  +G GS+F ILVL+     L +F+   RM  ++RK
Sbjct: 359 TCVNLPGTFNCIGNKTRVTMIGVGSAFGILVLVVGIWWLRKFLKKRRMSKRKRK 412


>At3g63320.1 68416.m07123 protein phosphatase 2C-related /
           PP2C-related protein phosphatase 2C - Rattus norvegicus,
           EMBL:AF095927
          Length = 423

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +1

Query: 514 GVKSFARDTVVEMLVNNAMLTVCGAWLGAVVIPLDWNTPWQQWPIPCYLGAIG 672
           GV S+   ++ + LVN A        + AVV+PL  N  W+  P    +G  G
Sbjct: 347 GVPSYCSISLADCLVNTAFEKGSMDNMAAVVVPLKSNLDWESQPKEQSVGPSG 399


>At4g31820.1 68417.m04522 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 571

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 648 SLLPWSYRWLLAG*CIDSIQSNL 716
           SLLPWS    L G CIDS+ + +
Sbjct: 149 SLLPWSEDLKLVGRCIDSVSAKI 171


>At2g35190.1 68415.m04316 novel plant SNARE 11 (NPSN11) contains 1
           transmembrane domain; identical to Novel plant SNARE 11
           (AtNPSN11) (Swiss-Prot:Q944A9) [Arabidopsis thaliana]
          Length = 265

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/20 (70%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -1

Query: 616 PGVSLQPPAMRRIRLAW-HY 560
           PGV L PPAM R RL W HY
Sbjct: 247 PGVGLAPPAMNR-RLLWNHY 265


>At3g24630.1 68416.m03093 hypothetical protein
          Length = 724

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 644 GHCCHGVFQSRGITTAPSHAPHTVSMALFTSISTT 540
           GHC +G   S   T   SH P T  ++L + +ST+
Sbjct: 537 GHCDNGEVSSCAATIHHSHEPETSQISLKSFLSTS 571


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,923,630
Number of Sequences: 28952
Number of extensions: 319979
Number of successful extensions: 730
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)