Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20429
         (577 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q81YM7 Cluster: Membrane protein, putative; n=10; Firmi...    36   0.90 
UniRef50_A6PNB1 Cluster: TrwC protein; n=2; Victivallis vadensis...    33   4.8  
UniRef50_Q38ET8 Cluster: Rab geranylgeranyl transferase componen...    33   4.8  
UniRef50_A6Q775 Cluster: Putative uncharacterized protein; n=1; ...    33   6.4  
UniRef50_A7EP78 Cluster: Putative uncharacterized protein; n=1; ...    33   6.4  
UniRef50_Q8NRC5 Cluster: Putative uncharacterized protein Cgl112...    32   8.4  

>UniRef50_Q81YM7 Cluster: Membrane protein, putative; n=10;
           Firmicutes|Rep: Membrane protein, putative - Bacillus
           anthracis
          Length = 154

 Score = 35.5 bits (78), Expect = 0.90
 Identities = 19/50 (38%), Positives = 29/50 (58%)
 Frame = +3

Query: 120 TISSLITCIYLPSIVTVISYRGSLYYVGKGSSFYILVLIFIAELLSRFIL 269
           T+ S+   +YL  +V VI    S Y   K S+FY+ +LIFI +L +  I+
Sbjct: 62  TLQSIPIAVYLGGLVGVIVISLSNYITPKISAFYLTLLIFIGQLFAGTII 111


>UniRef50_A6PNB1 Cluster: TrwC protein; n=2; Victivallis vadensis
           ATCC BAA-548|Rep: TrwC protein - Victivallis vadensis
           ATCC BAA-548
          Length = 265

 Score = 33.1 bits (72), Expect = 4.8
 Identities = 20/56 (35%), Positives = 31/56 (55%)
 Frame = -2

Query: 498 EHSTPE*SMRGNIVSIVKSVDNINVSSCKSNTGAPKSIIPIKKQKLTPRRNTNDLR 331
           EH   E   RGN+ S+   ++N +V+    +    +++ P  KQKLTPR N N +R
Sbjct: 35  EHDRVEGHWRGNLASVF-GLENESVAQDVFSL-FQQNLNPSTKQKLTPRNNPNSVR 88


>UniRef50_Q38ET8 Cluster: Rab geranylgeranyl transferase component
           A, putative; n=1; Trypanosoma brucei|Rep: Rab
           geranylgeranyl transferase component A, putative -
           Trypanosoma brucei
          Length = 973

 Score = 33.1 bits (72), Expect = 4.8
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -2

Query: 576 RFSRALSLASRPLCPWQALHAKHSCIEH-STPE*SMRGNI-VSIVKSVDNINVSSCKSNT 403
           RFSR + +A +PL  W+AL +   C E  +T   S+ G    S V+ +  +  + C++  
Sbjct: 725 RFSRVVIVAKKPLVTWKALSSSGCCEEEVTTATESLEGTAKTSSVEGIPPLVFALCQAQP 784

Query: 402 G 400
           G
Sbjct: 785 G 785


>UniRef50_A6Q775 Cluster: Putative uncharacterized protein; n=1;
           Sulfurovum sp. NBC37-1|Rep: Putative uncharacterized
           protein - Sulfurovum sp. (strain NBC37-1)
          Length = 308

 Score = 32.7 bits (71), Expect = 6.4
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = +3

Query: 66  YRYTKMFAFNTQLELRRITISSLITCIYLP---SIVTVISYRGSLYYVGKGSSFYILVLI 236
           Y +   F  +  L+L+R+        I  P    I+T  ++ GSL YVGK     + + +
Sbjct: 89  YHFKIHFLNHIALDLKRLLNHVKKNFISFPMTKKIITAFAFLGSLGYVGKFMGTMLALKV 148

Query: 237 FIAELLSRFILA 272
           FIA++ S F+LA
Sbjct: 149 FIAKIWS-FLLA 159


>UniRef50_A7EP78 Cluster: Putative uncharacterized protein; n=1;
           Sclerotinia sclerotiorum 1980|Rep: Putative
           uncharacterized protein - Sclerotinia sclerotiorum 1980
          Length = 502

 Score = 32.7 bits (71), Expect = 6.4
 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = +3

Query: 78  KMFAFNTQLELRRITISSLITCIYLPSIVTVISYRGSLYYVGKGSSFYILVLIFIAELLS 257
           K F F+T +     T++  +  IYL SI+T++     L  +G   +F I+V + +  LLS
Sbjct: 339 KGFPFSTWISRMNHTLNVPLNSIYLTSILTILL---CLINLGSSFAFNIIVSLSLLALLS 395

Query: 258 RFILAPRMIYKER-KARPV 311
            ++++   +  +R K  P+
Sbjct: 396 TYMMSIGCVLLKRIKGEPL 414


>UniRef50_Q8NRC5 Cluster: Putative uncharacterized protein Cgl1127;
           n=2; Corynebacterium glutamicum|Rep: Putative
           uncharacterized protein Cgl1127 - Corynebacterium
           glutamicum (Brevibacterium flavum)
          Length = 222

 Score = 32.3 bits (70), Expect = 8.4
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = -2

Query: 477 SMRGNIVSIVKSVDNINVSSCKSNTGAPKSIIPIKKQKLTPRRNTNDL 334
           +++G++   + + D  N   CK +T  P++I+PI ++    R N + L
Sbjct: 135 ALQGSLPDSIVATDPSNAIGCKDDTSLPQNIVPIYRKPNLDRDNRDTL 182


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 503,270,750
Number of Sequences: 1657284
Number of extensions: 9092175
Number of successful extensions: 20023
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20016
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39571085965
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)