Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20429
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   4.5  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.0  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    25   6.0  
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ...    25   7.9  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    25   7.9  

>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +3

Query: 66   YRYTKMFAFNTQLELRRITISSLITCIYLPSIVTVISYRGSLYY 197
            + Y+KM     +   R ++I SL  C+   ++ +  +  GS++Y
Sbjct: 1513 HEYSKMLNLGIEASWRSLSIDSLKKCLSKSNLESFEAKLGSIFY 1556


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 99   QLELRRITISSLITCIYLPSIVTVISYRGS 188
            Q  L R   + LIT   +PS+V  +SYRG+
Sbjct: 2458 QSMLDRAGSNMLITYFKIPSVVLRLSYRGT 2487


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -2

Query: 516 AKHSCIEHSTPE*SMRGNIVSIVKSVDNINVSSCKSNTGAPKSIIPIKKQKLT 358
           A+ +  +H  PE S +    +    V+N+N  S    T  P S +PI+   +T
Sbjct: 120 AERTSSQHQKPETSSQIGKDNAAP-VENVNEKSTSQETAPPVSTVPIQFGSIT 171


>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 485

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/45 (22%), Positives = 23/45 (51%)
 Frame = -2

Query: 564 ALSLASRPLCPWQALHAKHSCIEHSTPE*SMRGNIVSIVKSVDNI 430
           A+  A +   PW  + A+++     + +  + GN   ++ ++DNI
Sbjct: 184 AIKKAIKKFAPWIEVDARNALFNPDSADDLLSGNPDFVIDAIDNI 228


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 173 YDSHNTRQVNTCNKT*Y 123
           Y SH+ +QVN CN + Y
Sbjct: 226 YHSHSVKQVNFCNDSPY 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,174,650
Number of Sequences: 5004
Number of extensions: 41783
Number of successful extensions: 94
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)