Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20429
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0055 + 476204-476388,476481-476543,476684-476800,476920-47...    29   2.0  
04_04_0585 - 26386248-26386271,26386510-26386699,26387363-263874...    29   3.5  
06_01_0064 + 542101-542291,542391-542453,542559-542675,542763-54...    28   6.1  
06_02_0108 - 11917186-11917207,11917834-11917943,11918116-11918544     27   8.1  

>06_01_0055 +
           476204-476388,476481-476543,476684-476800,476920-477328,
           477448-477638,477706-477871
          Length = 376

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 186 SLYYVGKGSSFYILVLIFIAELLSRFILAPRMIYKERKARP 308
           SL  V        LVL+ + +L +   L P   +KERK+RP
Sbjct: 26  SLVKVAMDGGLNPLVLVTLQQLTAAIFLGPIAYFKERKSRP 66


>04_04_0585 - 26386248-26386271,26386510-26386699,26387363-26387463,
            26387554-26387685,26387759-26387857,26387956-26388127,
            26388217-26388512,26388601-26388726,26388848-26389062,
            26389154-26389225,26389299-26389368,26389441-26389517,
            26389605-26389923,26390034-26390225,26390321-26390551,
            26390585-26390950,26392251-26392313,26392394-26392456,
            26392544-26392642,26393497-26393523,26394299-26394358,
            26395230-26396147,26396243-26397268
          Length = 1645

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 227  QNIKRRSFAHIVERPSIRYDSHNT 156
            QN+K+R F  ++  P + Y  H+T
Sbjct: 1297 QNVKKRRFDDVINSPDVEYFGHST 1320


>06_01_0064 +
           542101-542291,542391-542453,542559-542675,542763-542892,
           543010-543168,543839-543990,544313-544436,544629-544669,
           545512-545757,546010-546126,546683-547097,548698-548849,
           548960-549104
          Length = 683

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 225 LVLIFIAELLSRFILAPRMIYKERKARP 308
           LVLI + +L++   LAP   +KER  RP
Sbjct: 41  LVLITLRQLVATIFLAPIAYFKERGKRP 68


>06_02_0108 - 11917186-11917207,11917834-11917943,11918116-11918544
          Length = 186

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 576 RFSRALSLASRPLCP-WQALHAKHSCIEHSTP 484
           R SR  S+   P+   WQALH+  SC  ++ P
Sbjct: 40  RLSRKHSMKQPPIAASWQALHSADSCQTNTPP 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,932,053
Number of Sequences: 37544
Number of extensions: 228880
Number of successful extensions: 450
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)