Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20429
         (577 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54780| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_34466| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_58000| Best HMM Match : MATH (HMM E-Value=1.1e-19)                  28   4.8  
SB_54259| Best HMM Match : Retinin_C (HMM E-Value=2.9)                 28   6.3  
SB_14676| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_31286| Best HMM Match : HEAT (HMM E-Value=0.092)                    28   6.3  
SB_13654| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_11432| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_54780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +3

Query: 117 ITISSLITCIYLPSIV--TVISYRGSLYYVGKGSSFYILVLIFIAELLSRFILAPRMIYK 290
           I ++   TC+ +  +V  T++ +    Y + +    Y+LV + IA+++    + PR I+ 
Sbjct: 7   IGLTVAFTCLVITDLVGNTLVIWVVVRYRMMRTPMNYLLVNLAIADMMFALFITPRFIFN 66

Query: 291 ERKARPVKRKQATSSNRLC 347
                  K  Q T+ + LC
Sbjct: 67  ----HTFKHPQGTAGHYLC 81


>SB_34466| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +1

Query: 55  INSIIDTLKCLRLILN*NYVE*QYQVLL 138
           ++S I+  +CL +I++ NYVE  Y+ L+
Sbjct: 20  VSSAINAFECLPIIIHLNYVEGHYKTLI 47


>SB_58000| Best HMM Match : MATH (HMM E-Value=1.1e-19)
          Length = 1451

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -2

Query: 525 ALHAKHSCIEHSTPE*SMRGNIVSIVKSVDNINVSSCKSNTGAPKSIIPIKKQKLTP 355
           A HA    +E  + + S   N   I  ++ N  V   K++TGA  ++IP+   K TP
Sbjct: 273 ATHAYFVSVELGSVDVSASRNKSMINVTISNRQVK-VKADTGAEANVIPLSYMKATP 328


>SB_54259| Best HMM Match : Retinin_C (HMM E-Value=2.9)
          Length = 748

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 350 LLGVNFCFFIGIILFGAPVLDLHE 421
           L+ VN C+F+  + +GAP++  +E
Sbjct: 475 LVQVNECYFVNQVTYGAPIVQANE 498


>SB_14676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 905

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -2

Query: 525 ALHAKHSCIEHSTPE*SMRGNIVSIVKSVDNINVSSCKSNTGAPKSIIPIKKQKLTP 355
           A HA    +E  + + S   N   I  ++ N  V   K++TGA  ++IP+   K TP
Sbjct: 273 ATHAYFVSVELRSVDVSASRNKSMINVTISNRQVK-VKADTGAEANVIPLSYMKATP 328


>SB_31286| Best HMM Match : HEAT (HMM E-Value=0.092)
          Length = 1270

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 433 VIHALNYTHNISPHTSFWCGMFYATMF 513
           +IH     H I PH +  CGMF+   F
Sbjct: 638 LIHTCRILHRILPHYTPLCGMFFIGRF 664


>SB_13654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1451

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
 Frame = -2

Query: 447 KSVDNINVSSC----KSNTGAPKSIIPIKKQKLTPRR 349
           KS+ N+ +S+C    K++TGA  ++IPI+  +   R+
Sbjct: 245 KSMINVTISNCQVKVKADTGAEANVIPIRLYRQITRK 281


>SB_11432| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 22/80 (27%), Positives = 40/80 (50%)
 Frame = +3

Query: 69  RYTKMFAFNTQLELRRITISSLITCIYLPSIVTVISYRGSLYYVGKGSSFYILVLIFIAE 248
           RY ++F F        IT+ SL+    +   +T I+YR       K  +++++  +  AE
Sbjct: 22  RYFRLFLFGL------ITVGSLLGNTIVVRSITSIAYR-------KPFTYHMVTCLATAE 68

Query: 249 LLSRFILAPRMIYKERKARP 308
           L+S  +L   +IY+E +  P
Sbjct: 69  LVSSLLLPFILIYEEAQTWP 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,848,711
Number of Sequences: 59808
Number of extensions: 291289
Number of successful extensions: 680
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)