Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20429
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81043-5|CAB02802.2|  278|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF016450-5|AAB65984.2|  280|Caenorhabditis elegans Serpentine re...    27   7.2  

>Z81043-5|CAB02802.2|  278|Caenorhabditis elegans Hypothetical
           protein C29F3.6 protein.
          Length = 278

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +1

Query: 367 LFLYWNNTFWRACIRLT*RNIDVIHALNYTHNISPHTSFWCGMFYATMFGVK 522
           +FL+  N F    +     ++ V+   ++  +++   S WC +FY TMF +K
Sbjct: 73  VFLFQENVFIFGFLVAVFHDVSVL--THFIISLNRFISVWCPIFYKTMFNLK 122


>AF016450-5|AAB65984.2|  280|Caenorhabditis elegans Serpentine
           receptor, class t protein68 protein.
          Length = 280

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
 Frame = +3

Query: 75  TKMFAFNTQLELRRITISSLITCIYLPS---IVTVISYRGSLYYVGKGSSFYILVLIF-I 242
           T +F FN   E+ RI I   +  I++P    IV  ++Y              I+VL F +
Sbjct: 7   TSIFTFNEDPEMLRIGIIYFLFTIFIPPLLIIVIKVTYINDRRAPNFPYKLMIIVLTFQL 66

Query: 243 AELLSRFILAPRMIY 287
            +    FI +P +++
Sbjct: 67  LQSTGHFITSPVLVF 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,879,927
Number of Sequences: 27780
Number of extensions: 227103
Number of successful extensions: 577
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)