Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20429
         (577 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19390.1 68414.m02412 wall-associated kinase, putative simila...    36   0.026
At5g47500.1 68418.m05865 pectinesterase family protein contains ...    27   9.0  

>At1g19390.1 68414.m02412 wall-associated kinase, putative similar
           to GB:CAB42872 from [Arabidopsis thaliana] (Plant Mol.
           Biol. 39 (6), 1189-1196 (1999))
          Length = 788

 Score = 35.5 bits (78), Expect = 0.026
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = +3

Query: 138 TCIYLPSIVTVISYRGSLYYVGKGSSFYILVLIFIAELLSRFILAPRMIYKERK 299
           TC+ LP     I  +  +  +G GS+F ILVL+     L +F+   RM  ++RK
Sbjct: 359 TCVNLPGTFNCIGNKTRVTMIGVGSAFGILVLVVGIWWLRKFLKKRRMSKRKRK 412


>At5g47500.1 68418.m05865 pectinesterase family protein contains
          Pfam profile: PF01095 pectinesterase
          Length = 362

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -3

Query: 80 FSVSIILFITNTIYCLTFKLSVCFSC 3
          FSVS++LF+  + +CL F+ S+  +C
Sbjct: 12 FSVSLLLFV--SFHCLCFRFSLVAAC 35


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,910,463
Number of Sequences: 28952
Number of extensions: 200654
Number of successful extensions: 482
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)