Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20424
(793 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 168 7e-43
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 133 2e-32
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 81 2e-16
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 73 6e-14
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 42 1e-04
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 40 3e-04
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 37 0.004
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 37 0.004
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 36 0.005
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 36 0.005
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 33 0.062
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 33 0.062
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 31 0.19
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 31 0.25
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce... 29 0.58
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 29 0.58
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ... 29 1.0
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 29 1.0
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual 28 1.3
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 28 1.3
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa... 27 4.1
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 26 5.4
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 5.4
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 26 5.4
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 5.4
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa... 25 9.4
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 25 9.4
SPAC4C5.04 |rad31|uba4|SUMO E1-like activator enzyme Rad31|Schiz... 25 9.4
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 168 bits (409), Expect = 7e-43
Identities = 76/84 (90%), Positives = 81/84 (96%)
Frame = +1
Query: 256 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELR 435
Y+NISFTVWDVGGQDKIRPLWRHYFQNTQG+IFVVDSNDRERI EA EEL RML+EDELR
Sbjct: 58 YRNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELR 117
Query: 436 DAVLLIFANKQDLPNAMNAAEITD 507
DA+LL+FANKQDLPNAMNAAEITD
Sbjct: 118 DALLLVFANKQDLPNAMNAAEITD 141
Score = 101 bits (241), Expect = 2e-22
Identities = 48/61 (78%), Positives = 54/61 (88%)
Frame = +2
Query: 86 MGNMFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVDTKT 265
MG + LF+ LFGK+EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETV+ +
Sbjct: 1 MGLSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRN 60
Query: 266 L 268
+
Sbjct: 61 I 61
Score = 76.6 bits (180), Expect = 4e-15
Identities = 32/38 (84%), Positives = 35/38 (92%)
Frame = +3
Query: 507 QLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 620
+LGLHSLR+R WYIQATCATSGDGLYEGL+WLS LKN
Sbjct: 142 KLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLKN 179
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 133 bits (322), Expect = 2e-32
Identities = 59/84 (70%), Positives = 70/84 (83%)
Frame = +1
Query: 256 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELR 435
YKNI F VWDVGGQDKIRPLWRHYF T+GLIFVVDS D RI EAR+EL R++S+ E+R
Sbjct: 62 YKNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMR 121
Query: 436 DAVLLIFANKQDLPNAMNAAEITD 507
D +LL+ ANKQDLP A++ A+ITD
Sbjct: 122 DCLLLVLANKQDLPGALSPAQITD 145
Score = 83.8 bits (198), Expect = 3e-17
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = +2
Query: 98 FANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVDTKTL 268
F+ F LF KEMRILM+GLDAAGKTTILYKLKL + V TIPT+GFNVETV K +
Sbjct: 9 FSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNI 65
Score = 46.4 bits (105), Expect = 5e-06
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +3
Query: 510 LGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 617
L L L++R W +Q TCA +GDGL EGL WLS K
Sbjct: 147 LQLDKLKDRLWNVQPTCALTGDGLLEGLAWLSQNAK 182
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 80.6 bits (190), Expect = 2e-16
Identities = 33/82 (40%), Positives = 56/82 (68%)
Frame = +1
Query: 259 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRD 438
+ + FT+WD+GGQ +R W++YF++T+ +I+VVDS D R+ E R L +L E++L
Sbjct: 58 EGLRFTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLF 117
Query: 439 AVLLIFANKQDLPNAMNAAEIT 504
+L+ ANK D+ A+++ EI+
Sbjct: 118 TSILVLANKSDVSGALSSEEIS 139
Score = 44.8 bits (101), Expect = 1e-05
Identities = 23/48 (47%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Frame = +2
Query: 128 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVDTKTL 268
++E+R+L++GLD AGKTTIL K L E V + PT GF + T++ + L
Sbjct: 14 EREVRVLLLGLDNAGKTTIL-KCLLNEDVNEVSPTFGFQIRTLEVEGL 60
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +3
Query: 510 LGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 617
L + ++ +W I + A +G + + + WL+N LK
Sbjct: 142 LNISKYKSSHWRIFSVSALTGLNIKDAISWLANDLK 177
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 72.5 bits (170), Expect = 6e-14
Identities = 32/80 (40%), Positives = 49/80 (61%)
Frame = +1
Query: 262 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDA 441
N+ FT +D+GG + R LWR YF G++++VD D ER+ E++ EL +L+ +EL
Sbjct: 63 NVRFTTFDLGGHQQARRLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARV 122
Query: 442 VLLIFANKQDLPNAMNAAEI 501
LI NK D P A++ E+
Sbjct: 123 PFLILGNKIDAPGAISEDEL 142
Score = 34.3 bits (75), Expect = 0.020
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 131 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI 232
K ++L +GLD AGKTT+L+ LK + PT+
Sbjct: 19 KHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTL 52
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/72 (23%), Positives = 33/72 (45%)
Frame = +1
Query: 259 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRD 438
K + +WD GQ++ R + Y++ G+I V D D++ ++ L + +
Sbjct: 55 KTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQE-IDRYAVEG 113
Query: 439 AVLLIFANKQDL 474
L+ NK D+
Sbjct: 114 VNRLLVGNKSDM 125
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 40.3 bits (90), Expect = 3e-04
Identities = 21/77 (27%), Positives = 37/77 (48%)
Frame = +1
Query: 250 SRYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDE 429
++ K I +WD GQ+K R + R+Y++ G + V D +++ E L + +
Sbjct: 57 NQQKRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAP 116
Query: 430 LRDAVLLIFANKQDLPN 480
V+L +K DL N
Sbjct: 117 STICVVLA-GSKSDLQN 132
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 36.7 bits (81), Expect = 0.004
Identities = 20/82 (24%), Positives = 35/82 (42%)
Frame = +1
Query: 262 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDA 441
++ +WD GQ++ + L Y++N I V D + +A+ ++ L
Sbjct: 63 SVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAK-SWIKELQRQAPEGI 121
Query: 442 VLLIFANKQDLPNAMNAAEITD 507
V+ + NK DL A E D
Sbjct: 122 VIALAGNKLDLAQERRAVEKAD 143
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 36.7 bits (81), Expect = 0.004
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +1
Query: 259 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAR 396
K I +WD GQ++ R + Y++ G++ + D D++ R
Sbjct: 56 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVR 101
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 36.3 bits (80), Expect = 0.005
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +1
Query: 262 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER--IGEAREELMRMLSEDELR 435
++ ++DVGGQ R W + F+N +IF V ND ++ A E R++ L
Sbjct: 191 HLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLNDYDKKLYERAAPERNRLVESISLF 250
Query: 436 DAVL 447
D+++
Sbjct: 251 DSII 254
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 36.3 bits (80), Expect = 0.005
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = +1
Query: 259 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRD 438
K I +WD GQ++ R + Y++ G + V D + L + L E +
Sbjct: 57 KKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWL-KELREHADSN 115
Query: 439 AVLLIFANKQDL 474
V+++ NK DL
Sbjct: 116 IVIMLVGNKTDL 127
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 32.7 bits (71), Expect = 0.062
Identities = 16/72 (22%), Positives = 33/72 (45%)
Frame = +1
Query: 259 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRD 438
+ + +WD GQ++ R L Y +++ I V D + E+ + + + D
Sbjct: 58 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNT-EKWIEDVRAERGDD 116
Query: 439 AVLLIFANKQDL 474
++++ NK DL
Sbjct: 117 VIIVLVGNKTDL 128
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 32.7 bits (71), Expect = 0.062
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Frame = +1
Query: 271 FTVWDVGGQDKIRPLWRHYFQNTQGLIF----------VVDSNDRERIGEAREELMRMLS 420
+ +DVGGQ R W H F+N L+F +V+ N ++ EA + +
Sbjct: 236 YRFFDVGGQRSERRKWIHCFENVTALLFLVSLAGYDQCLVEDNSGNQMQEALLLWDSICN 295
Query: 421 EDELRDAVLLIFANKQDL 474
++ +++F NK DL
Sbjct: 296 SSWFSESAMILFLNKLDL 313
Score = 26.6 bits (56), Expect = 4.1
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = +2
Query: 125 GKKEMRILMVGLDAAGKTTILYKLKL 202
G ++++L++G +GKTTI+ +++L
Sbjct: 71 GGNDIKVLLLGAGDSGKTTIMKQMRL 96
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 31.1 bits (67), Expect = 0.19
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Frame = +1
Query: 262 NISFTVWDVGGQDKIRPLW-----RHYFQNTQGLIFVVDSNDRE 378
N+ +WD GGQ+ + H F+N Q LI+V D RE
Sbjct: 50 NLVLNLWDCGGQEAFMENYLSAQRDHIFRNVQVLIYVFDVESRE 93
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 30.7 bits (66), Expect = 0.25
Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = +1
Query: 259 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERIGEAREELMRMLSEDE 429
K ++ +WD GQ++ + L +++ + V D N+ E + R+E + S
Sbjct: 55 KVVTLQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSN 114
Query: 430 LRDAVLLIFANKQDL 474
++ NK D+
Sbjct: 115 PETFPFILLGNKVDV 129
>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 388
Score = 29.5 bits (63), Expect = 0.58
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = +1
Query: 232 WL*CGDSRYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMR 411
+L CG+ + NIS + G+ + R +W+++ + S ++ +I E + EL R
Sbjct: 286 FLDCGNYKPVNISVAPIEEQGEYESRRVWKNFAVALDAGDYAAASQEKSKIEEGQRELRR 345
Query: 412 MLSE 423
E
Sbjct: 346 QEEE 349
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 29.5 bits (63), Expect = 0.58
Identities = 13/60 (21%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +1
Query: 259 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERIGEAREELMRMLSEDE 429
K ++ +WD GQ++ + L +++ + V + N+ + + R+E + S+DE
Sbjct: 55 KLVTLQLWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDE 114
>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
repair protein Sfr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 28.7 bits (61), Expect = 1.0
Identities = 22/93 (23%), Positives = 42/93 (45%)
Frame = +1
Query: 388 EAREELMRMLSEDELRDAVLLIFANKQDLPNAMNAAEITDNWVCIRCATVTGTSKRHAPL 567
+ +E+L LSE +LRD+ + ++ P N+ +DN I + A
Sbjct: 16 QCKEDLKVSLSESDLRDSQGQL--GIENPPKCNNSGNHSDNLGFIEQSETVHPENEKALT 73
Query: 568 PETDCTRVSTGSPISSRTPTANRMCANSQTNLI 666
P+ T++ T PI+ TP + + ++ L+
Sbjct: 74 PDLRDTKIHTSLPIT--TPFSKKRAREAKNILL 104
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 250 SRYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 375
+ + I F VWD GQ+K+ L Y+ Q I + D R
Sbjct: 53 TNFGEICFNVWDTAGQEKLGGLRDGYYIQGQCGIIMFDVTSR 94
>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 28.3 bits (60), Expect = 1.3
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = -2
Query: 267 NVFVS--TVSTLKPIVGIVVTISPNLSLYRIVVLPAASKPTINILISFLPKRPLNKFANI 94
NVF T T++P V + ++S N +L VVL + + +IN+ L ++ FA +
Sbjct: 184 NVFFHEYTTETIRPHVRLHNSLSTNAALSASVVLASRLEKSINVFFFIL--FAVHWFA-L 240
Query: 93 FPILNYYEYNF 61
FPI Y + F
Sbjct: 241 FPIFRKYIHVF 251
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/49 (22%), Positives = 25/49 (51%)
Frame = +1
Query: 253 RYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEARE 399
R I+F++WD+GGQ + + + ++F+ D + + + +E
Sbjct: 55 RNTEITFSIWDLGGQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKE 103
>SPAC2G11.13 |atg22||autophagy associated protein Atg22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/23 (52%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = -3
Query: 314 SGLILSWPPTSHTV-KLMFLYLL 249
SG+ILSW P+S + K++FL L+
Sbjct: 128 SGIILSWSPSSFLLGKIVFLILV 150
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 143 ILMVGLDAAGKTTILYKLKL 202
I+MVGL +GKTT KL L
Sbjct: 104 IMMVGLQGSGKTTTCSKLAL 123
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +2
Query: 131 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI 232
KE+R+++ G GK++++ L + VT+IP +
Sbjct: 2 KEVRVVICGDQGVGKSSLISALIQEDNVTSIPKV 35
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 128 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI 232
KK + ++G +GKT++ +L E TT+P+I
Sbjct: 35 KKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSI 69
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 107 LFKGLFGKKEMRILMVGLDAAGKTTI 184
L K ++GK+ + I+ +G AGK+T+
Sbjct: 229 LLKDMYGKEHVNIVFIGHVDAGKSTL 254
>SPCC553.09c |spb70|pol12|DNA polymerase alpha
B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +2
Query: 89 GNMFANLFKGLFGKKEMRILMVG--LDAAGKTTI-LYKLKLGEIVTTIPTI 232
GN+FA L + ++ L G L+ + + + LKLGE + T+P I
Sbjct: 456 GNLFARLVSHVLHQRHFYPLFPGGSLEKCNPSNLDIAHLKLGEFLNTMPDI 506
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 9.4
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = -2
Query: 291 SNIPHSKTNVFVSTVSTLKPIVGIVVTISPNLSLYRIVVLPAASKPTINILISFLPKR-P 115
SN+ + +V +TVS + V+ P+ L LP + N FLPKR
Sbjct: 100 SNLSATGESVNTTTVSAINEDTREVILGRPSPKLANQSTLPTELFQSQNDYSRFLPKRKD 159
Query: 114 LNKFANIFPILN 79
K + + P+L+
Sbjct: 160 FEKKSQVGPVLS 171
>SPAC4C5.04 |rad31|uba4|SUMO E1-like activator enzyme
Rad31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 307
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Frame = -2
Query: 342 LCILEIMPPQWSD-----FVLASNIPHSKTNVFVSTVSTLKPIVGI 220
LC+L+ M D F+ AS+I + NVF + L P+V I
Sbjct: 58 LCVLDSMTVYEKDVEEQFFIEASDIGQLRANVFKKKLHELNPLVEI 103
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,332,071
Number of Sequences: 5004
Number of extensions: 72810
Number of successful extensions: 257
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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