Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20422
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    29   0.98 
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    26   6.9  
SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb...    25   9.1  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   9.1  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    25   9.1  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    25   9.1  

>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 1   RHERGPAPLRPSAPGAPGTPQTQQLPGAKQNRV-TTMPKPVGIDPVQ 138
           +H R P+  + SAP +PGT  +  +PG K++ +    P P   D V+
Sbjct: 509 KHARRPSK-QASAPSSPGT-TSAAVPGGKKSAIEAAAPIPTSADTVE 553


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 352 RPISALNDKVCERPEPLRNLRNNKNWRPRG-NDDRSTKNSY 471
           +PI +  +K+ E P  L +   NKN    G N + S  N Y
Sbjct: 505 KPIESSTNKISENPTTLSSKVENKNEPKTGENKEPSQTNEY 545


>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 73  LPGAKQNRVTTMPKPVGIDPVQIL 144
           LP   +  +  MP PV +DP+Q L
Sbjct: 120 LPNELEEDIEYMPPPVHLDPIQSL 143


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -2

Query: 307 PNISERNCFWKLITRSALARFELVTEGRQA 218
           P +S +N   KL+T+SA+ R   V EGR A
Sbjct: 641 PPVSYKN---KLVTQSAIGRSTSVREGRYA 667


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 157 FLFRSISARGRFRQVWAWWSHDFVWLQV 74
           FL R++ +R R    W W + D VW +V
Sbjct: 172 FLCRALGSRAR----WIWNAEDHVWTEV 195


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 409 LRNNKNWRPRGNDDRSTKNSYKQFFSTLRISR 504
           +R ++   PRG +  S +NSY     +  +SR
Sbjct: 675 IRKDRELSPRGRERSSNRNSYSDLSRSSSLSR 706


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,739,407
Number of Sequences: 5004
Number of extensions: 49615
Number of successful extensions: 141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)