Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20422
(773 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0506 - 18861787-18861917,18862017-18862201,18862542-188626... 32 0.44
12_02_1226 - 27182423-27182768,27182855-27183765 30 1.8
03_05_0543 - 25404630-25405408,25405461-25405605 30 1.8
03_05_0019 + 19862171-19863049 30 1.8
09_02_0475 + 9724676-9724936,9725518-9726216,9726273-9726596,972... 29 3.1
04_04_0766 - 27923120-27923554,27923843-27924580,27924815-279248... 29 4.1
04_04_0144 - 23095172-23095830,23095915-23097265 29 4.1
05_04_0329 + 20311325-20311659,20311749-20311788 29 5.4
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 28 7.2
01_06_0717 - 31446860-31447074,31447183-31447270,31448909-314490... 28 7.2
08_01_0648 + 5602454-5602513,5602913-5603000,5603128-5604248,560... 28 9.5
07_03_0154 + 14509979-14512033 28 9.5
07_01_0580 + 4316895-4317053,4317530-4318024,4318124-4319305 28 9.5
04_04_1322 + 32640414-32642327 28 9.5
04_04_1171 - 31455136-31455482,31455805-31458982 28 9.5
02_01_0302 - 2021221-2023305 28 9.5
>07_03_0506 -
18861787-18861917,18862017-18862201,18862542-18862613,
18863163-18863234,18863596-18863667,18864371-18864518,
18864864-18865922,18866663-18866762
Length = 612
Score = 32.3 bits (70), Expect = 0.44
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 161 LFSLSFNICTGSIPTGLGMVVTRFCLAPGSCCVCGVPG 48
+ LS+N GSIP LG + + L + +CG+PG
Sbjct: 483 VLDLSYNELNGSIPDSLGQLASLQILFTDNAGLCGIPG 520
>12_02_1226 - 27182423-27182768,27182855-27183765
Length = 418
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 16 PAPLRPSAPGAPGTPQTQQLPGAKQNRVTTMPKPVGIDP 132
PAP++PS+P AP P + T +PKP DP
Sbjct: 225 PAPVQPSSPAAPA--GVVPAPVQPSSPATAVPKPPSNDP 261
>03_05_0543 - 25404630-25405408,25405461-25405605
Length = 307
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 7 ERGPAPLRPSAPGAPGTPQTQQLPGAKQNRVTTMPKP 117
++ P+PL PS +P TP QQ P + R P P
Sbjct: 111 KKTPSPLTPSPTPSPVTPPPQQPPQPEPRRPPAAPLP 147
>03_05_0019 + 19862171-19863049
Length = 292
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 13 GPAPL-RPSAPGAPGTPQTQQLPGAKQNRVTTMPKP 117
GP P +PSAP P Q ++ AKQ R T +P P
Sbjct: 191 GPPPKPQPSAPKRPQVVQMRRPAPAKQQRPTILPPP 226
>09_02_0475 +
9724676-9724936,9725518-9726216,9726273-9726596,
9726900-9727847
Length = 743
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = -2
Query: 280 WKLITRSALARFELVTEGRQAYWRVGLIIFLYDELFVLQSCFLFRSISARG 128
W+L+ R +L R E+ + +Q Y YD +L+SCFL+ S+ RG
Sbjct: 336 WELVERHSLER-EVFSSFKQIY---------YDMSLMLKSCFLYLSVFPRG 376
>04_04_0766 -
27923120-27923554,27923843-27924580,27924815-27924874,
27925281-27925328
Length = 426
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 18 RAIASLGSWSSRDSTNAAATWSQTKSCDHHAQTCRNR 128
+A+A G+W + ++AAA +Q S +H + R R
Sbjct: 226 KAVAGAGAWMNNGDSSAAAMTTQGSSIKNHVMSERRR 262
>04_04_0144 - 23095172-23095830,23095915-23097265
Length = 669
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -1
Query: 158 FSLSFNICTGSIPTGL-GMVVTRFCLAPGSCCVCGVP 51
F++SFN TG IP+GL GM T F +CG P
Sbjct: 187 FNVSFNNLTGGIPSGLSGMPATSFL----GMSLCGKP 219
>05_04_0329 + 20311325-20311659,20311749-20311788
Length = 124
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 19 APLRPSAPGAPGTPQTQQLPGAKQNRVTTMPKPVGIDP 132
+PL PSA A G Q QQ P + + + VG+ P
Sbjct: 46 SPLHPSAAAAGGQHQQQQQPHRRNLSLEELAGEVGLSP 83
>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 3 ARAWPRAIASLGSWSSRDSTNAAATWSQTKSCDHHAQTCRN-RPRADIE 146
+R+W R+ + SWS S + + + S+++S D A R RPR+ +
Sbjct: 1245 SRSWSRSRSRSRSWSRSRSRSRSPSRSRSRSYDQGAGPARRPRPRSGFD 1293
>01_06_0717 -
31446860-31447074,31447183-31447270,31448909-31449012,
31449618-31449745,31450461-31450555,31461823-31463115,
31463188-31464039,31464568-31464621
Length = 942
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +1
Query: 13 GPAPLRPSAPGAPGTPQTQQLPGAKQNRVTTMP 111
G PL P+ P PG P Q PGA R P
Sbjct: 698 GAGPL-PACPTVPGAPDPQDGPGATAGRPRLSP 729
>08_01_0648 +
5602454-5602513,5602913-5603000,5603128-5604248,
5605146-5605217,5605218-5605373,5605458-5605748
Length = 595
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +3
Query: 45 SSRDSTNAAATWSQTK-SCDHHAQTCRNRPRADIERKRKQDCSTNSSSYRNIIKPTR 212
S D ++ +S +K SCD C + +D E +DC +N N+IK R
Sbjct: 360 SDHDEDVPSSPYSDSKDSCDGSDSECESYESSDKEGDDLEDCDSN-DMLENLIKVAR 415
>07_03_0154 + 14509979-14512033
Length = 684
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = +1
Query: 7 ERGPAPLRPSAPGAPGTPQTQQLPGAKQNRVTTMPKPVGID 129
ERGP PL +AP P P P Q P P D
Sbjct: 42 ERGPLPLPAAAPPPPPPPPPPPPPPQVQAATVATPVPATPD 82
>07_01_0580 + 4316895-4317053,4317530-4318024,4318124-4319305
Length = 611
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -2
Query: 148 RSISARGRFRQVWAWWSHDFVWLQVAAAFVE-SRELQEPRDAMA 20
R++S G R AWW++ F AAA + + E+++ R A A
Sbjct: 482 RAVSLFGGVRFSLAWWAYTFPMTSAAAATIRYAAEVEDTRLARA 525
>04_04_1322 + 32640414-32642327
Length = 637
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -1
Query: 98 TRFCLAPGSCCVCGVPG-APGAEGRNG 21
T FC+A G CG PG A GR+G
Sbjct: 299 TEFCIAHGGGRRCGTPGCTKAARGRSG 325
>04_04_1171 - 31455136-31455482,31455805-31458982
Length = 1174
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -1
Query: 155 SLSFNICTGSIPTGLGMVVTRFCLAPGSCCVCG 57
S+SFN+ +G +P GLG + + L+ G + G
Sbjct: 407 SMSFNLFSGPLPAGLGRLQSLMFLSLGQNSLAG 439
>02_01_0302 - 2021221-2023305
Length = 694
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +1
Query: 22 PLRPSAPGAPGTPQTQQLPGAKQNRVTTMPKPVGIDP 132
P PS P + TP + PG + + P P G P
Sbjct: 442 PSYPSPPSSATTPSSHSPPGGSSSTTPSYPSPNGGKP 478
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,290,188
Number of Sequences: 37544
Number of extensions: 353883
Number of successful extensions: 1544
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1538
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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