Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20422
(773 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10642| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 2e-13
SB_7325| Best HMM Match : SNF2_N (HMM E-Value=8.9e-32) 65 5e-11
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.34
SB_43770| Best HMM Match : PET (HMM E-Value=8.8e-24) 31 1.4
SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39) 31 1.4
SB_58050| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_52575| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_18357| Best HMM Match : Phage_integrase (HMM E-Value=0.0063) 30 1.8
SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2) 29 3.2
SB_44425| Best HMM Match : SAM_1 (HMM E-Value=0.00024) 29 4.2
SB_50935| Best HMM Match : TPR_2 (HMM E-Value=0.00065) 29 5.5
SB_43945| Best HMM Match : TSP_1 (HMM E-Value=0.03) 29 5.5
SB_53873| Best HMM Match : Fibrinogen_C (HMM E-Value=0) 28 7.3
SB_27305| Best HMM Match : MFMR (HMM E-Value=0.53) 28 7.3
SB_12795| Best HMM Match : Collagen (HMM E-Value=0.04) 28 7.3
SB_48618| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 28 9.6
>SB_10642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1023
Score = 73.3 bits (172), Expect = 2e-13
Identities = 38/89 (42%), Positives = 53/89 (59%)
Frame = +2
Query: 497 FQGIHRNNLAKTARINKSIMNYHANAXXXXXXXXXXXXXXXMRG*WQKTKKVTVN*FDQK 676
F+ HR+ +K ++NK++MNYH+ MR + ++ D K
Sbjct: 36 FKEYHRSVQSKIVKLNKAVMNYHSVTDREKKKEEERIEKERMRRLMAEDEEGYRKLIDHK 95
Query: 677 KDKRLAFLLSQTDEYIASLTEMVKQHKQD 763
KDKRL +LLSQTDEYIASLT+MV+QHK+D
Sbjct: 96 KDKRLHYLLSQTDEYIASLTKMVQQHKRD 124
Score = 34.3 bits (75), Expect = 0.11
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +3
Query: 456 HQEFLQTVLQHVKDFKEY 509
HQE+L +LQH +DFKEY
Sbjct: 22 HQEYLNMILQHARDFKEY 39
>SB_7325| Best HMM Match : SNF2_N (HMM E-Value=8.9e-32)
Length = 884
Score = 65.3 bits (152), Expect = 5e-11
Identities = 34/75 (45%), Positives = 45/75 (60%)
Frame = +2
Query: 539 INKSIMNYHANAXXXXXXXXXXXXXXXMRG*WQKTKKVTVN*FDQKKDKRLAFLLSQTDE 718
+NK++MNYH+ MR + ++ D KKDKRL +LLSQTDE
Sbjct: 481 LNKAVMNYHSVTDREKKKEEERIEKERMRRLMAEDEEGYRKLIDHKKDKRLHYLLSQTDE 540
Query: 719 YIASLTEMVKQHKQD 763
YIASLT+MV+QHK+D
Sbjct: 541 YIASLTKMVQQHKRD 555
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 32.7 bits (71), Expect = 0.34
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +1
Query: 22 PLRPSAPGAPGTPQTQQLPGA 84
P PSAPG PGTP T P A
Sbjct: 503 PSTPSAPGTPGTPSTPSTPSA 523
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +1
Query: 22 PLRPSAPGAPGTPQTQQLP 78
P PS P APGTP T P
Sbjct: 515 PSTPSTPSAPGTPSTPSTP 533
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +1
Query: 22 PLRPSAPGAPGTPQTQQLP 78
P PSAPG P TP T P
Sbjct: 518 PSTPSAPGTPSTPSTPSTP 536
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 22 PLRPSAPGAPGTPQTQQLPGAKQNRVT 102
P PS P PGTP T P A +T
Sbjct: 156 PSTPSTPITPGTPSTPSTPSAPGTPIT 182
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 22 PLRPSAPGAPGTPQTQQLPGAKQNRVT 102
P PS P PGTP T P A +T
Sbjct: 706 PSTPSTPITPGTPSTPSTPSAPGTPIT 732
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 22 PLRPSAPGAPGTPQTQQLPG 81
P P PG P TP T PG
Sbjct: 506 PSAPGTPGTPSTPSTPSAPG 525
>SB_43770| Best HMM Match : PET (HMM E-Value=8.8e-24)
Length = 251
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = -1
Query: 143 NICTGSIPTGLGMVVTRFCLA-PGSCCVCGVPGAPG--AEGRNGAGPRSC 3
+ C I T LG+ R C+A P +C C P PG A GP SC
Sbjct: 168 DFCEKRIKTALGVGAVRACMAQPSTCKRCNGPVNPGDMALFAERLGPDSC 217
>SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39)
Length = 351
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = -1
Query: 143 NICTGSIPTGLGMVVTRFCLA-PGSCCVCGVPGAPG--AEGRNGAGPRSC 3
+ C I T LG+ R C+A P +C C P PG A GP SC
Sbjct: 55 DFCEKRIKTALGVGAVRACMAQPSTCKRCNGPVNPGDMALFAERLGPDSC 104
>SB_58050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 19 APLRPSAPGAPGTPQTQQLPGAK 87
AP P APG PG+P LPG K
Sbjct: 116 APGAPGAPGPPGSPGAPGLPGEK 138
>SB_52575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1267
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 36 GSWSSRDSTNAAATWSQTKSCDHHAQTCRNRPRADIERKRK 158
G W SRD+T A +S K C++ TC + + +R+ +
Sbjct: 631 GWWVSRDATKATVLFSDCKICNNIDATCLLQEEINYDRQAR 671
>SB_18357| Best HMM Match : Phage_integrase (HMM E-Value=0.0063)
Length = 683
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -2
Query: 307 PNISERNCFWKLITRSALARFELVTEGRQ 221
P+IS R +W L+TR++ A F+L +G +
Sbjct: 354 PDISPRKYWWPLVTRNSTAAFKLGIKGNK 382
>SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2)
Length = 878
Score = 29.5 bits (63), Expect = 3.2
Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Frame = +3
Query: 69 AATWSQTKSCDHHAQTCRNRPRADIERKRKQDCSTNSSSYRNII---KPTRQYA*RPSVT 239
A T +T S D + + + K ++ ST + + + + KP ++ + P
Sbjct: 340 AGTNHKTNSIDTNHTITQTAQKLTRPNKEQKTISTVTKIFPSTLPDKKPAKKLSQSPLAV 399
Query: 240 SSNRARALRVINFQKQLRSEILGQVRRDTTLETAVNIKA 356
SN+ F +++ EI G+VR ++ +N+KA
Sbjct: 400 ESNKT-------FDRKINKEIRGEVREIVSIAKKINVKA 431
>SB_44425| Best HMM Match : SAM_1 (HMM E-Value=0.00024)
Length = 414
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/78 (26%), Positives = 36/78 (46%)
Frame = +3
Query: 111 QTCRNRPRADIERKRKQDCSTNSSSYRNIIKPTRQYA*RPSVTSSNRARALRVINFQKQL 290
Q NR + D ER+R+ +C T+S+ Y P + + +N A+R + +QL
Sbjct: 157 QKFSNRRKRDDERRRESECLTHSACYLKGDSPVPE---NTNDAYTNSRYAVRQYDALQQL 213
Query: 291 RSEILGQVRRDTTLETAV 344
I +++ T E V
Sbjct: 214 TRIIYTDKKKEKTQEEQV 231
>SB_50935| Best HMM Match : TPR_2 (HMM E-Value=0.00065)
Length = 1033
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -2
Query: 124 FRQVWAWWSHDFVWLQVAAAF--VESRELQEPRDAMARG 14
++Q+ W+HD+ WL+ AA+ V S + Q RD M G
Sbjct: 420 WKQIIRRWTHDYGWLRPAASRNPVPSIKAQGSRDRMNSG 458
>SB_43945| Best HMM Match : TSP_1 (HMM E-Value=0.03)
Length = 407
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 9 AWPRAIASLGSWSSRDSTNAAATWSQTKSCDHHAQTCRNRPRADIERKRKQDCST 173
AW + G+ S + + Q SCD QTC +P + RK DC +
Sbjct: 162 AWEAWSVTCGAASRKRTIKTTPYTVQKLSCDGLPQTCSQQPEVE-NRKTMCDCKS 215
>SB_53873| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
Length = 660
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 101 VTRFCLAPGSCCVCGVPGAPGAEGRNG 21
V +FC C+ G PG PG +G G
Sbjct: 108 VEQFCKPKDKLCLRGPPGPPGPQGPKG 134
>SB_27305| Best HMM Match : MFMR (HMM E-Value=0.53)
Length = 823
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 160 CFLFRSISARGRFRQVWAWWSHDFVWL 80
CFLF S+S G F ++ SH W+
Sbjct: 718 CFLFHSVSTSGEFFEILICKSHVIGWM 744
>SB_12795| Best HMM Match : Collagen (HMM E-Value=0.04)
Length = 181
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 101 VTRFCLAPGSCCVCGVPGAPGAEGRNG 21
V +FC C+ G PG PG +G G
Sbjct: 108 VEQFCKPKDKLCLRGPPGPPGPQGPKG 134
>SB_48618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 126
Score = 27.9 bits (59), Expect = 9.6
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +3
Query: 189 RNIIKP-TRQYA*--RPSVTSSNRARALRVINFQKQLRSEILGQVRRDTTLETAVNIKAY 359
RNI+ P TR + S+T N R R +FQ +L E +G + T+ NI
Sbjct: 52 RNIVLPKTRSIFLFLKSSITEVNTRRRERFSDFQDRLSEEKIGSTKTRTSFRDLENIYKC 111
Query: 360 KRT 368
++T
Sbjct: 112 EKT 114
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +1
Query: 7 ERGPAPLRPSAPGAPGTPQTQQLPGAKQNRVTTM-PKP 117
E AP +AP G P+T LP TTM P+P
Sbjct: 829 ETSVAPETTAAPETSGAPETTMLPETTSAPATTMAPEP 866
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,280,199
Number of Sequences: 59808
Number of extensions: 414963
Number of successful extensions: 1664
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1593
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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