Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20422
(773 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical pr... 88 8e-18
Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical pr... 88 8e-18
AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-lik... 88 8e-18
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p... 50 2e-06
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 33 0.23
U53344-2|AAP13769.1| 301|Caenorhabditis elegans Collagen protei... 33 0.30
U53344-1|AAA96223.1| 363|Caenorhabditis elegans Collagen protei... 33 0.30
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 33 0.30
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 33 0.30
U39644-6|AAO44907.1| 300|Caenorhabditis elegans Collagen protei... 32 0.52
U39644-5|AAO44906.1| 300|Caenorhabditis elegans Collagen protei... 32 0.52
U39644-4|AAA80357.2| 301|Caenorhabditis elegans Collagen protei... 32 0.52
U39644-3|AAA80358.2| 301|Caenorhabditis elegans Collagen protei... 32 0.52
AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical... 32 0.52
U41624-5|AAF99941.1| 314|Caenorhabditis elegans Collagen protei... 31 0.69
Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical pr... 31 0.91
AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical... 31 0.91
Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical pr... 31 1.2
L07144-9|AAK21441.1| 737|Caenorhabditis elegans Hypothetical pr... 31 1.2
AF003386-13|AAB54250.1| 311|Caenorhabditis elegans Blistered cu... 31 1.2
AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical ... 30 1.6
AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical ... 30 1.6
AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical ... 30 1.6
AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical ... 30 1.6
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 30 2.1
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 30 2.1
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 30 2.1
CU457740-4|CAM36334.1| 735|Caenorhabditis elegans Hypothetical ... 30 2.1
AL032627-21|CAD66221.1| 289|Caenorhabditis elegans Hypothetical... 30 2.1
AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen prot... 30 2.1
AC006630-5|AAK68323.1| 335|Caenorhabditis elegans Collagen prot... 30 2.1
Z82083-5|CAB04973.1| 298|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z66498-1|CAA91290.1| 304|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z49131-6|CAA88979.1| 297|Caenorhabditis elegans Hypothetical pr... 29 2.8
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 29 2.8
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 29 2.8
Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z66499-3|CAA91300.1| 348|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z54237-4|CAN86899.1| 297|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 29 3.7
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 29 3.7
U80441-8|AAB37656.1| 284|Caenorhabditis elegans Dumpy : shorter... 29 3.7
U50312-9|AAA92325.1| 294|Caenorhabditis elegans Collagen protei... 29 3.7
U50312-7|AAA92323.2| 306|Caenorhabditis elegans Collagen protei... 29 3.7
U39644-7|AAO44908.1| 307|Caenorhabditis elegans Collagen protei... 29 3.7
M34451-1|AAA28143.1| 348|Caenorhabditis elegans protein ( C.ele... 29 3.7
L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen... 29 3.7
AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen prot... 29 3.7
AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen prot... 29 3.7
Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 29 4.9
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 29 4.9
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 29 4.9
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 29 4.9
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 29 4.9
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 29 4.9
L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protei... 29 4.9
AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen stru... 29 4.9
AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen stru... 29 4.9
AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 29 4.9
AF000263-19|AAG00021.1| 321|Caenorhabditis elegans Collagen pro... 29 4.9
AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen prot... 29 4.9
Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z77132-3|CAB00860.1| 310|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z77132-2|CAB00858.1| 294|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z67738-4|CAJ43444.1| 279|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z67738-3|CAA91544.2| 332|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z49938-3|CAA90188.1| 306|Caenorhabditis elegans Hypothetical pr... 28 6.4
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 28 6.4
AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen prot... 28 6.4
Z83228-2|CAB05733.1| 370|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical pr... 28 8.5
U61948-2|AAB03143.2| 345|Caenorhabditis elegans Collagen protei... 28 8.5
U55366-4|AAA97982.1| 310|Caenorhabditis elegans Collagen protei... 28 8.5
U50312-8|AAA92324.1| 294|Caenorhabditis elegans Collagen protei... 28 8.5
M25480-1|AAA27986.1| 326|Caenorhabditis elegans collagen protein. 28 8.5
AF045645-6|AAC02608.1| 314|Caenorhabditis elegans Collagen prot... 28 8.5
>Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical
protein F01G4.1 protein.
Length = 1474
Score = 87.8 bits (208), Expect = 8e-18
Identities = 44/96 (45%), Positives = 58/96 (60%)
Frame = +3
Query: 255 RALRVINFQKQLRSEILGQVRRDTTLETAVNIKAYKRTKRQGLREARATXXXXXXXXXXX 434
RALR++N Q Q+RSE++ ++RDTTLETA+N AY+RTKRQ LREAR T
Sbjct: 217 RALRLVNLQTQVRSEVMACLKRDTTLETALNPYAYRRTKRQSLREARVTEKLEKQQKMEQ 276
Query: 435 XXXXXXXHQEFLQTVLQHVKDFKEYTVTT*LKQHAS 542
H + +Q ++QH K+FKEY LK S
Sbjct: 277 ERKRRQKHTDLMQAIIQHGKEFKEYHRNNLLKMAKS 312
Score = 65.3 bits (152), Expect = 5e-11
Identities = 33/87 (37%), Positives = 48/87 (55%)
Frame = +2
Query: 497 FQGIHRNNLAKTARINKSIMNYHANAXXXXXXXXXXXXXXXMRG*WQKTKKVTVN*FDQK 676
F+ HRNNL K A+ K++M YH N M+ Q+ ++ D+K
Sbjct: 298 FKEYHRNNLLKMAKSRKAVMTYHQNNERERKKDEIRNEKLRMQKLMQEDEEGYRALLDEK 357
Query: 677 KDKRLAFLLSQTDEYIASLTEMVKQHK 757
KD+RL +LL QTDEY+ SL +V+QH+
Sbjct: 358 KDQRLVYLLQQTDEYVDSLCSLVRQHQ 384
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/55 (41%), Positives = 32/55 (58%)
Frame = +1
Query: 91 NRVTTMPKPVGIDPVQILXXXXXXXXXXXXXXXXXLSNLPANMPDDLRLQAQIEL 255
NR TT+ P GIDPV +L L+NLPA++PD ++L+A+IEL
Sbjct: 162 NRPTTISVPSGIDPVGMLKQRENMIQNRIGLRMKLLNNLPADIPDHMKLKAEIEL 216
>Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical
protein F01G4.1 protein.
Length = 1474
Score = 87.8 bits (208), Expect = 8e-18
Identities = 44/96 (45%), Positives = 58/96 (60%)
Frame = +3
Query: 255 RALRVINFQKQLRSEILGQVRRDTTLETAVNIKAYKRTKRQGLREARATXXXXXXXXXXX 434
RALR++N Q Q+RSE++ ++RDTTLETA+N AY+RTKRQ LREAR T
Sbjct: 217 RALRLVNLQTQVRSEVMACLKRDTTLETALNPYAYRRTKRQSLREARVTEKLEKQQKMEQ 276
Query: 435 XXXXXXXHQEFLQTVLQHVKDFKEYTVTT*LKQHAS 542
H + +Q ++QH K+FKEY LK S
Sbjct: 277 ERKRRQKHTDLMQAIIQHGKEFKEYHRNNLLKMAKS 312
Score = 65.3 bits (152), Expect = 5e-11
Identities = 33/87 (37%), Positives = 48/87 (55%)
Frame = +2
Query: 497 FQGIHRNNLAKTARINKSIMNYHANAXXXXXXXXXXXXXXXMRG*WQKTKKVTVN*FDQK 676
F+ HRNNL K A+ K++M YH N M+ Q+ ++ D+K
Sbjct: 298 FKEYHRNNLLKMAKSRKAVMTYHQNNERERKKDEIRNEKLRMQKLMQEDEEGYRALLDEK 357
Query: 677 KDKRLAFLLSQTDEYIASLTEMVKQHK 757
KD+RL +LL QTDEY+ SL +V+QH+
Sbjct: 358 KDQRLVYLLQQTDEYVDSLCSLVRQHQ 384
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/55 (41%), Positives = 32/55 (58%)
Frame = +1
Query: 91 NRVTTMPKPVGIDPVQILXXXXXXXXXXXXXXXXXLSNLPANMPDDLRLQAQIEL 255
NR TT+ P GIDPV +L L+NLPA++PD ++L+A+IEL
Sbjct: 162 NRPTTISVPSGIDPVGMLKQRENMIQNRIGLRMKLLNNLPADIPDHMKLKAEIEL 216
>AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-like
protein protein.
Length = 1474
Score = 87.8 bits (208), Expect = 8e-18
Identities = 44/96 (45%), Positives = 58/96 (60%)
Frame = +3
Query: 255 RALRVINFQKQLRSEILGQVRRDTTLETAVNIKAYKRTKRQGLREARATXXXXXXXXXXX 434
RALR++N Q Q+RSE++ ++RDTTLETA+N AY+RTKRQ LREAR T
Sbjct: 217 RALRLVNLQTQVRSEVMACLKRDTTLETALNPYAYRRTKRQSLREARVTEKLEKQQKMEQ 276
Query: 435 XXXXXXXHQEFLQTVLQHVKDFKEYTVTT*LKQHAS 542
H + +Q ++QH K+FKEY LK S
Sbjct: 277 ERKRRQKHTDLMQAIIQHGKEFKEYHRNNLLKMAKS 312
Score = 65.3 bits (152), Expect = 5e-11
Identities = 33/87 (37%), Positives = 48/87 (55%)
Frame = +2
Query: 497 FQGIHRNNLAKTARINKSIMNYHANAXXXXXXXXXXXXXXXMRG*WQKTKKVTVN*FDQK 676
F+ HRNNL K A+ K++M YH N M+ Q+ ++ D+K
Sbjct: 298 FKEYHRNNLLKMAKSRKAVMTYHQNNERERKKDEIRNEKLRMQKLMQEDEEGYRALLDEK 357
Query: 677 KDKRLAFLLSQTDEYIASLTEMVKQHK 757
KD+RL +LL QTDEY+ SL +V+QH+
Sbjct: 358 KDQRLVYLLQQTDEYVDSLCSLVRQHQ 384
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/55 (41%), Positives = 32/55 (58%)
Frame = +1
Query: 91 NRVTTMPKPVGIDPVQILXXXXXXXXXXXXXXXXXLSNLPANMPDDLRLQAQIEL 255
NR TT+ P GIDPV +L L+NLPA++PD ++L+A+IEL
Sbjct: 162 NRPTTISVPSGIDPVGMLKQRENMIQNRIGLRMKLLNNLPADIPDHMKLKAEIEL 216
>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
protein C52B9.8 protein.
Length = 1336
Score = 50.0 bits (114), Expect = 2e-06
Identities = 26/90 (28%), Positives = 45/90 (50%)
Frame = +2
Query: 497 FQGIHRNNLAKTARINKSIMNYHANAXXXXXXXXXXXXXXXMRG*WQKTKKVTVN*FDQK 676
F+ H+ N+ ++ KS+ Y N ++ Q+ ++ D+K
Sbjct: 202 FKEFHKRNMLNHTKVRKSMQQYITNENKRIAREEMKNEKNRIQKLIQEDEEGYRAMLDEK 261
Query: 677 KDKRLAFLLSQTDEYIASLTEMVKQHKQDT 766
KD+RL +LL QTD+YI SL +++KQ + T
Sbjct: 262 KDQRLVYLLEQTDDYIKSLCDLLKQQQNAT 291
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/83 (22%), Positives = 39/83 (46%)
Frame = +3
Query: 261 LRVINFQKQLRSEILGQVRRDTTLETAVNIKAYKRTKRQGLREARATXXXXXXXXXXXXX 440
L +++FQ +LR ++L + +N + +RTK + L+E +
Sbjct: 128 LSLLDFQTELRKKVLATTVLVPPNDFLINPWSIRRTKYEYLQELK-----RHPDRAILEK 182
Query: 441 XXXXXHQEFLQTVLQHVKDFKEY 509
+ FLQ++ +H ++FKE+
Sbjct: 183 RRKVTNFHFLQSLTKHAREFKEF 205
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 33.1 bits (72), Expect = 0.23
Identities = 14/23 (60%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Frame = -1
Query: 83 APGSCCVC--GVPGAPGAEGRNG 21
A GSCC C G PG PG GR+G
Sbjct: 101 AAGSCCTCQVGPPGPPGPPGRDG 123
>U53344-2|AAP13769.1| 301|Caenorhabditis elegans Collagen protein
166, isoform b protein.
Length = 301
Score = 32.7 bits (71), Expect = 0.30
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 5/25 (20%)
Frame = -1
Query: 77 GSCCVCGV-----PGAPGAEGRNGA 18
G CC CGV PGAPG++G +GA
Sbjct: 104 GGCCGCGVSAAGPPGAPGSDGEDGA 128
>U53344-1|AAA96223.1| 363|Caenorhabditis elegans Collagen protein
166, isoform a protein.
Length = 363
Score = 32.7 bits (71), Expect = 0.30
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 5/25 (20%)
Frame = -1
Query: 77 GSCCVCGV-----PGAPGAEGRNGA 18
G CC CGV PGAPG++G +GA
Sbjct: 166 GGCCGCGVSAAGPPGAPGSDGEDGA 190
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 32.7 bits (71), Expect = 0.30
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +1
Query: 10 RGPAPLRPSAPGAPGTPQTQQLPGAKQNRVTTMPKPVG 123
+GP P P APGAPGTP +P + + P P G
Sbjct: 186 KGP-PGPPGAPGAPGTPGEPGVPAQSEPLIPGEPGPPG 222
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 32.7 bits (71), Expect = 0.30
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +1
Query: 10 RGPAPLRPSAPGAPGTPQTQQLPGAKQNRVTTMPKPVG 123
+GP P P APGAPGTP +P + + P P G
Sbjct: 186 KGP-PGPPGAPGAPGTPGEPGVPAQSEPLIPGEPGPPG 222
>U39644-6|AAO44907.1| 300|Caenorhabditis elegans Collagen protein
170 protein.
Length = 300
Score = 31.9 bits (69), Expect = 0.52
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 5/25 (20%)
Frame = -1
Query: 77 GSCCVCGV-----PGAPGAEGRNGA 18
G CC CGV PGAPG +G +GA
Sbjct: 103 GGCCGCGVSAAGPPGAPGQDGEDGA 127
>U39644-5|AAO44906.1| 300|Caenorhabditis elegans Collagen protein
169 protein.
Length = 300
Score = 31.9 bits (69), Expect = 0.52
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 5/25 (20%)
Frame = -1
Query: 77 GSCCVCGV-----PGAPGAEGRNGA 18
G CC CGV PGAPG +G +GA
Sbjct: 103 GGCCGCGVSAAGPPGAPGQDGEDGA 127
>U39644-4|AAA80357.2| 301|Caenorhabditis elegans Collagen protein
168 protein.
Length = 301
Score = 31.9 bits (69), Expect = 0.52
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 5/25 (20%)
Frame = -1
Query: 77 GSCCVCGV-----PGAPGAEGRNGA 18
G CC CGV PGAPG +G +GA
Sbjct: 104 GGCCGCGVSAAGPPGAPGQDGEDGA 128
>U39644-3|AAA80358.2| 301|Caenorhabditis elegans Collagen protein
167 protein.
Length = 301
Score = 31.9 bits (69), Expect = 0.52
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 5/25 (20%)
Frame = -1
Query: 77 GSCCVCGV-----PGAPGAEGRNGA 18
G CC CGV PGAPG +G +GA
Sbjct: 104 GGCCGCGVSAAGPPGAPGQDGEDGA 128
>AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical
protein Y51H4A.9 protein.
Length = 351
Score = 31.9 bits (69), Expect = 0.52
Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Frame = -1
Query: 77 GSCCVCGV--PGAPGAEGRNGA 18
GSCC CGV G PGA G++GA
Sbjct: 155 GSCCSCGVGAVGPPGAPGQDGA 176
>U41624-5|AAF99941.1| 314|Caenorhabditis elegans Collagen protein
174 protein.
Length = 314
Score = 31.5 bits (68), Expect = 0.69
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 5/25 (20%)
Frame = -1
Query: 77 GSCCVCGV-----PGAPGAEGRNGA 18
G CC CGV PG PG +G NGA
Sbjct: 117 GGCCGCGVSPQGPPGVPGRDGDNGA 141
>Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical
protein F08G5.4 protein.
Length = 299
Score = 31.1 bits (67), Expect = 0.91
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 83 APGSCCVCGVPGAPGAEGRNGAG 15
APG G PGAPG +G+ G G
Sbjct: 185 APGDAGAPGAPGAPGQDGQRGTG 207
>AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical
protein Y41C4A.16 protein.
Length = 309
Score = 31.1 bits (67), Expect = 0.91
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -1
Query: 89 CLAPGSCCVCGVPGAPGAEGRNGAG 15
C PG G PG PG GR GAG
Sbjct: 109 CCLPGPAGPSGAPGKPGRPGRPGAG 133
>Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical
protein C44C10.1 protein.
Length = 300
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 5/25 (20%)
Frame = -1
Query: 77 GSCCVCGV-----PGAPGAEGRNGA 18
G CC CGV PGAPG +G +G+
Sbjct: 103 GGCCGCGVSAAGPPGAPGQDGEDGS 127
>L07144-9|AAK21441.1| 737|Caenorhabditis elegans Hypothetical
protein R05D3.2 protein.
Length = 737
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -2
Query: 256 LARFELVTEGRQAYWRVGL-IIFLYDELFVLQS-CFLFRSISARGRFRQVWAW 104
+ F+L+ W ++ Y+ LFV+ S FLF ++A R RQ+W W
Sbjct: 658 MTTFDLLGSHSSLQWLGSFRVVVAYNTLFVVLSVAFLFNQLTASMR-RQIWKW 709
>AF003386-13|AAB54250.1| 311|Caenorhabditis elegans Blistered
cuticle protein 2 protein.
Length = 311
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Frame = -1
Query: 110 GMVVTRFCLAPGS-CCVC-----GVPGAPGAEGRNG 21
G ++ LAPG CC C G PG PG +GR+G
Sbjct: 101 GFSSSKSSLAPGGQCCSCKTGPSGPPGPPGEDGRDG 136
>AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical
protein T23E7.2e protein.
Length = 908
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +1
Query: 16 PAPLRPSAPGAPGTPQTQQLPGAKQNRVTTMPKP 117
PAP P P P TP+T + P + P+P
Sbjct: 464 PAPKTPKTPKTPRTPRTPKTPRTPKTPAVVEPEP 497
>AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical
protein T23E7.2b protein.
Length = 880
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +1
Query: 16 PAPLRPSAPGAPGTPQTQQLPGAKQNRVTTMPKP 117
PAP P P P TP+T + P + P+P
Sbjct: 414 PAPKTPKTPKTPRTPRTPKTPRTPKTPAVVEPEP 447
>AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical
protein T23E7.2c protein.
Length = 885
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +1
Query: 16 PAPLRPSAPGAPGTPQTQQLPGAKQNRVTTMPKP 117
PAP P P P TP+T + P + P+P
Sbjct: 464 PAPKTPKTPKTPRTPRTPKTPRTPKTPAVVEPEP 497
>AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical
protein T23E7.2a protein.
Length = 930
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +1
Query: 16 PAPLRPSAPGAPGTPQTQQLPGAKQNRVTTMPKP 117
PAP P P P TP+T + P + P+P
Sbjct: 464 PAPKTPKTPKTPRTPRTPKTPRTPKTPAVVEPEP 497
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -1
Query: 89 CLAPGSCCVCGVPGAPGAEGRNG-AGP 12
C A S C G PG PG +G G AGP
Sbjct: 94 CAAQASGCPAGPPGPPGPDGSAGPAGP 120
>Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical
protein F52B11.4 protein.
Length = 304
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -1
Query: 89 CLAPGSCCVCGVPGAPGAEGRNGA 18
C PG+ G PG PG GR GA
Sbjct: 104 CCLPGAAGPAGTPGKPGRPGRPGA 127
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 83 APGSCCVCGVPGAPGAEGRNGA 18
APG G PG PGA+G GA
Sbjct: 248 APGQKGPSGAPGQPGADGNPGA 269
>Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.6 protein.
Length = 304
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -1
Query: 89 CLAPGSCCVCGVPGAPGAEGRNGA 18
C PG+ G PG PG GR GA
Sbjct: 104 CCLPGAAGPAGTPGKPGRPGRPGA 127
>Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.5 protein.
Length = 304
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -1
Query: 89 CLAPGSCCVCGVPGAPGAEGRNGA 18
C PG+ G PG PG GR GA
Sbjct: 104 CCLPGAAGPAGTPGKPGRPGRPGA 127
>Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.1 protein.
Length = 304
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -1
Query: 89 CLAPGSCCVCGVPGAPGAEGRNGA 18
C PG+ G PG PG GR GA
Sbjct: 104 CCLPGAAGPAGTPGKPGRPGRPGA 127
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -1
Query: 89 CLAPGSCCVCGVPGAPGAEGRNG-AGP 12
C A S C G PG PG +G G AGP
Sbjct: 94 CAAQASGCPAGPPGPPGPDGSAGPAGP 120
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +1
Query: 22 PLRPSAPGAPGTPQTQQLPGAKQNRVTTMP 111
P +P PGAPGTP T P TT P
Sbjct: 116 PGKPGRPGAPGTPGTPGKPPVAPCEPTTPP 145
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -1
Query: 89 CLAPGSCCVCGVPGAPGAEGRNGA 18
C PG G PG PG GR GA
Sbjct: 101 CCLPGPPGPAGAPGKPGKPGRPGA 124
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 19 APLRPSAPGAPGTPQTQQLPG 81
AP +P PG PG P T PG
Sbjct: 112 APGKPGKPGRPGAPGTPGTPG 132
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +1
Query: 22 PLRPSAPGAPGTPQTQQLPGAKQNRVTTMP 111
P +P PGAPGTP T P TT P
Sbjct: 111 PGKPGRPGAPGTPGTPGKPPVAPCEPTTPP 140
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -1
Query: 89 CLAPGSCCVCGVPGAPGAEGRNGA 18
C PG G PG PG GR GA
Sbjct: 96 CCLPGPPGPAGAPGKPGKPGRPGA 119
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 19 APLRPSAPGAPGTPQTQQLPG 81
AP +P PG PG P T PG
Sbjct: 107 APGKPGKPGRPGAPGTPGTPG 127
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +1
Query: 22 PLRPSAPGAPGTPQTQQLPGAKQNRVTTMP 111
P +P PGAPGTP T P TT P
Sbjct: 111 PGKPGRPGAPGTPGTPGKPPVAPCEPTTPP 140
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -1
Query: 89 CLAPGSCCVCGVPGAPGAEGRNGA 18
C PG G PG PG GR GA
Sbjct: 96 CCLPGPPGPAGAPGKPGKPGRPGA 119
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 19 APLRPSAPGAPGTPQTQQLPG 81
AP +P PG PG P T PG
Sbjct: 107 APGKPGKPGRPGAPGTPGTPG 127
>CU457740-4|CAM36334.1| 735|Caenorhabditis elegans Hypothetical
protein C50E10.4 protein.
Length = 735
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 19 APLRPSAPGAPGTPQTQQLPGAKQNRVTT-MPKPVGID 129
AP+ P+AP AP TP+ + T MP+ +D
Sbjct: 269 APMAPAAPAAPATPEAAPAAEVMDTSIATEMPQESAVD 306
>AL032627-21|CAD66221.1| 289|Caenorhabditis elegans Hypothetical
protein Y41C4A.19 protein.
Length = 289
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -1
Query: 89 CLAPGSCCVCGVPGAPGAEGRNGA 18
C PG+ G PG PG GR GA
Sbjct: 88 CCLPGAAGPAGTPGKPGRPGRPGA 111
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = -1
Query: 83 APGSCCVCGVPGAPGAEGRNGA 18
APGS G PG PGA G GA
Sbjct: 232 APGSKGPSGAPGQPGANGNPGA 253
>AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen protein
50 protein.
Length = 418
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/41 (43%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Frame = +1
Query: 7 ERGPA-PLRPSAP-GAPGTPQTQQLPGAKQNRVTTMPKPVG 123
E GPA P P P G PG P PGA T P P G
Sbjct: 199 EPGPAGPAGPPGPDGQPGAPGPDGQPGAGGTTSTNQPGPPG 239
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = -1
Query: 83 APGSCCVC--GVPGAPGAEGRNG-AGP 12
A G+C C G PG PG +G G AGP
Sbjct: 158 AAGNCITCPAGPPGPPGPDGNAGPAGP 184
>AC006630-5|AAK68323.1| 335|Caenorhabditis elegans Collagen protein
165 protein.
Length = 335
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/18 (66%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
Frame = -1
Query: 59 GVPGAPGAEGRNG-AGPR 9
G PGAPGA+GR G +GP+
Sbjct: 262 GAPGAPGAQGRKGESGPK 279
>Z82083-5|CAB04973.1| 298|Caenorhabditis elegans Hypothetical
protein ZK1010.7 protein.
Length = 298
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 71 CCVCGVPGAPGAEGRNGAGPR 9
CC+ G+PG G G+NGA R
Sbjct: 99 CCLPGLPGPDGPPGKNGAPGR 119
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 80 PGSCCVCGVPGAPGAEGRNGAGPRSC 3
PG G PG PG +G G P+ C
Sbjct: 259 PGQAGPAGQPGQPGPQGERGICPKYC 284
>Z66498-1|CAA91290.1| 304|Caenorhabditis elegans Hypothetical
protein M195.1 protein.
Length = 304
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 5/26 (19%)
Frame = -1
Query: 83 APGSCCVCGV-----PGAPGAEGRNG 21
A G CC CG PG PG +GR+G
Sbjct: 105 AGGQCCSCGSGPAGPPGTPGEDGRDG 130
>Z49131-6|CAA88979.1| 297|Caenorhabditis elegans Hypothetical
protein ZC373.7 protein.
Length = 297
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 80 PGSCCVCGVPGAPGAEGRNGA 18
PGS G PG PG++G NGA
Sbjct: 175 PGSAGHPGAPGQPGSKGNNGA 195
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -1
Query: 89 CLAPGSCCVCGVPGAPGAEGRNGA 18
C PG GVPG PG GR GA
Sbjct: 103 CCLPGPPGPAGVPGKPGKPGRPGA 126
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -1
Query: 89 CLAPGSCCVCGVPGAPGAEGRNGA 18
C PG GVPG PG GR GA
Sbjct: 103 CCLPGPPGPAGVPGKPGKPGRPGA 126
>Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical
protein Y41E3.2 protein.
Length = 289
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -1
Query: 80 PGSCCVCGVPGAPGAEGRNG 21
PGS + G PGAPGA+G G
Sbjct: 223 PGSNGIDGAPGAPGAKGEPG 242
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 22 PLRPSAPGAPGTPQTQQLPGAKQNRVTTMP 111
P +P PGAPG P T P + TT P
Sbjct: 104 PGKPGKPGAPGQPGTPGRPPQQPCEPTTPP 133
>Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical
protein T05A1.2 protein.
Length = 300
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Frame = -1
Query: 86 LAPGSCCVC--GVPGAPGAEGRNGA-GP 12
L P C C G PGAPGA G+ G+ GP
Sbjct: 141 LTPPPCPACPPGPPGAPGAPGKPGSEGP 168
>Z66499-3|CAA91300.1| 348|Caenorhabditis elegans Hypothetical
protein T01B7.7 protein.
Length = 348
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 80 PGSCCVCGVPGAPGAEGRNGA 18
PG CG PGAPG++G+ G+
Sbjct: 228 PGMPGDCGPPGAPGSDGKPGS 248
>Z54237-4|CAN86899.1| 297|Caenorhabditis elegans Hypothetical
protein T11B7.3a protein.
Length = 297
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1
Query: 83 APGSCCVCGVPGAPGAEGRNG 21
APG GVPG PG GR+G
Sbjct: 254 APGQPGTIGVPGGPGIPGRDG 274
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
K04H4.1b protein.
Length = 1502
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -1
Query: 77 GSCCVCGVPGAPGAEGRNG 21
G C G PGAPGA G NG
Sbjct: 1101 GDCGEDGYPGAPGAPGSNG 1119
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -1
Query: 89 CLAPGSCCVCGVPGAPGAEGRNGAG 15
C PG G PGAPGA G G G
Sbjct: 545 CGEPGLDGYPGAPGAPGAPGETGFG 569
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -1
Query: 77 GSCCVCGVPGAPGAEGRNG 21
G C G PGAPGA G NG
Sbjct: 1358 GDCGEDGYPGAPGAPGSNG 1376
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -1
Query: 89 CLAPGSCCVCGVPGAPGAEGRNGAG 15
C PG G PGAPGA G G G
Sbjct: 802 CGEPGLDGYPGAPGAPGAPGETGFG 826
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -1
Query: 77 GSCCVCGVPGAPGAEGRNG 21
G C G PGAPGA G NG
Sbjct: 1357 GDCGEDGYPGAPGAPGSNG 1375
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -1
Query: 89 CLAPGSCCVCGVPGAPGAEGRNGAG 15
C PG G PGAPGA G G G
Sbjct: 801 CGEPGLDGYPGAPGAPGAPGETGFG 825
>U80441-8|AAB37656.1| 284|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 5 protein.
Length = 284
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Frame = -1
Query: 89 CLAPGSCCVCGVPGAPGAEGR-NGAGP 12
C P C G PG PGA G G GP
Sbjct: 87 CGLPSQGCPAGAPGNPGAPGEPGGTGP 113
>U50312-9|AAA92325.1| 294|Caenorhabditis elegans Collagen protein
10 protein.
Length = 294
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +1
Query: 22 PLRPSAPGAPGTPQTQQLPGAKQNRVTTMPKPVGIDPV 135
P P PG PG P T PG K + T P+ PV
Sbjct: 103 PGPPGPPGQPGAPGTPGAPGPKGDDNTATFAPLTCAPV 140
>U50312-7|AAA92323.2| 306|Caenorhabditis elegans Collagen protein
144 protein.
Length = 306
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +1
Query: 22 PLRPSAPGAPGTPQTQQLPGAKQNRVTTMPKPVGIDPV 135
P P PG PG P T PG K + T P+ PV
Sbjct: 115 PGPPGPPGQPGAPGTPGAPGPKGDDNTATFAPLTCAPV 152
>U39644-7|AAO44908.1| 307|Caenorhabditis elegans Collagen protein
171 protein.
Length = 307
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 5/28 (17%)
Frame = -1
Query: 77 GSCCVCGV-----PGAPGAEGRNGAGPR 9
G CC CG PG+PG +G+ G+ R
Sbjct: 110 GGCCGCGTSAAGPPGSPGPDGQEGSNGR 137
>M34451-1|AAA28143.1| 348|Caenorhabditis elegans protein (
C.elegans collagen (rol-6) gene, complete cds. ).
Length = 348
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 80 PGSCCVCGVPGAPGAEGRNGA 18
PG CG PGAPG++G+ G+
Sbjct: 228 PGMPGDCGPPGAPGSDGKPGS 248
>L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen
protein.
Length = 308
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Frame = -1
Query: 77 GSCCVCGV--PGAPGAEGRNGA 18
GSCC CG+ G GA G++GA
Sbjct: 109 GSCCSCGIGAAGPAGAPGKDGA 130
>AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen protein
40 protein.
Length = 416
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Frame = -1
Query: 77 GSCCVCGV--PGAPGAEGRNGA 18
GSCC CG+ G GA G++GA
Sbjct: 122 GSCCSCGIGAAGPAGAPGKDGA 143
>AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen protein
109 protein.
Length = 291
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -1
Query: 71 CCVCGVPGAPGAEGRNG 21
CC G PG PG GRNG
Sbjct: 92 CCKPGHPGRPGLPGRNG 108
>Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical
protein T11F9.9 protein.
Length = 299
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 89 CLAPGSCCVCGVPGAPGAEGRNGA 18
C PG+ G PG PG G+ GA
Sbjct: 99 CCLPGAAGPAGTPGKPGRPGKPGA 122
>Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical
protein F55C10.3 protein.
Length = 266
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 89 CLAPGSCCVCGVPGAPGAEGRNGA 18
C PG+ G PG PG G+ GA
Sbjct: 66 CCLPGAAGPAGTPGKPGRPGKPGA 89
>Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical
protein F55C10.2 protein.
Length = 299
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 89 CLAPGSCCVCGVPGAPGAEGRNGA 18
C PG+ G PG PG G+ GA
Sbjct: 99 CCLPGAAGPAGTPGKPGRPGKPGA 122
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 89 CLAPGSCCVCGVPGAPGAEGRNGA 18
C PG+ G PG PG G+ GA
Sbjct: 99 CCLPGAAGPAGTPGKPGRPGKPGA 122
>Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.6 protein.
Length = 299
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 89 CLAPGSCCVCGVPGAPGAEGRNGA 18
C PG+ G PG PG G+ GA
Sbjct: 99 CCLPGAAGPAGTPGKPGRPGKPGA 122
>Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.4 protein.
Length = 299
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 89 CLAPGSCCVCGVPGAPGAEGRNGA 18
C PG+ G PG PG G+ GA
Sbjct: 99 CCLPGAAGPAGTPGKPGRPGKPGA 122
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +1
Query: 13 GPAPLRPSAPGAPGTPQTQQLPGAK--QNRVTTMPKPVG 123
GPA RP +PG PG LPG K ++T P P G
Sbjct: 580 GPAG-RPGSPGPPGQDGFPGLPGQKGEPTQLTLRPGPPG 617
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +1
Query: 40 PGAPGTPQTQQLPG--AKQNRVTTMP 111
PG PGTP Q +PG A +N+V P
Sbjct: 702 PGLPGTPGLQGMPGEPAPENQVNPAP 727
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +1
Query: 13 GPAPLRPSAPGAPGTPQTQQLPGAK--QNRVTTMPKPVG 123
GPA RP +PG PG LPG K ++T P P G
Sbjct: 579 GPAG-RPGSPGPPGQDGFPGLPGQKGEPTQLTLRPGPPG 616
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +1
Query: 40 PGAPGTPQTQQLPG--AKQNRVTTMP 111
PG PGTP Q +PG A +N+V P
Sbjct: 701 PGLPGTPGLQGMPGEPAPENQVNPAP 726
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +1
Query: 13 GPAPLRPSAPGAPGTPQTQQLPGAK--QNRVTTMPKPVG 123
GPA RP +PG PG LPG K ++T P P G
Sbjct: 579 GPAG-RPGSPGPPGQDGFPGLPGQKGEPTQLTLRPGPPG 616
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +1
Query: 40 PGAPGTPQTQQLPG--AKQNRVTTMP 111
PG PGTP Q +PG A +N+V P
Sbjct: 701 PGLPGTPGLQGMPGEPAPENQVNPAP 726
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +1
Query: 13 GPAPLRPSAPGAPGTPQTQQLPGAK--QNRVTTMPKPVG 123
GPA RP +PG PG LPG K ++T P P G
Sbjct: 580 GPAG-RPGSPGPPGQDGFPGLPGQKGEPTQLTLRPGPPG 617
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +1
Query: 40 PGAPGTPQTQQLPG--AKQNRVTTMP 111
PG PGTP Q +PG A +N+V P
Sbjct: 702 PGLPGTPGLQGMPGEPAPENQVNPAP 727
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -1
Query: 80 PGSCCVCGVPGAPGAEGRNGA 18
PGS G PGAPGA+G+ GA
Sbjct: 250 PGSKGPPGNPGAPGADGKPGA 270
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -1
Query: 83 APGSCCVCGVPGAPGAEGRNG-AGPR 9
APG G PGAPG + G AGP+
Sbjct: 166 APGDAGTNGAPGAPGGDAPPGEAGPK 191
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +1
Query: 13 GPAPLRPSAPGAPGTPQTQQLPGAK--QNRVTTMPKPVG 123
GPA RP +PG PG LPG K ++T P P G
Sbjct: 616 GPAG-RPGSPGPPGQDGFPGLPGQKGEPTQLTLRPGPPG 653
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +1
Query: 40 PGAPGTPQTQQLPG--AKQNRVTTMP 111
PG PGTP Q +PG A +N+V P
Sbjct: 738 PGLPGTPGLQGMPGEPAPENQVNPAP 763
>L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protein
91 protein.
Length = 278
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = +1
Query: 13 GPAPLRPSAPGAPGTPQTQQLPGAKQNRVTTMPKPVG 123
GPA APGAPG P PG R T P G
Sbjct: 173 GPAG-DAGAPGAPGAPGNDGQPGQNGQRSTGTPGAAG 208
>AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-3) protein.
Length = 299
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 89 CLAPGSCCVCGVPGAPGAEGRNGA 18
C PG+ G PG PG G+ GA
Sbjct: 99 CCLPGAAGPAGTPGKPGRPGKPGA 122
>AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-117) protein.
Length = 299
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 89 CLAPGSCCVCGVPGAPGAEGRNGA 18
C PG+ G PG PG G+ GA
Sbjct: 99 CCLPGAAGPAGTPGKPGRPGKPGA 122
>AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein
68 protein.
Length = 329
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Frame = -1
Query: 77 GSCCVCGV--PGAPGAEGRNG 21
G+CC CGV PG GA G +G
Sbjct: 133 GACCSCGVGPPGPSGAPGTDG 153
>AF000263-19|AAG00021.1| 321|Caenorhabditis elegans Collagen
protein 56 protein.
Length = 321
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -1
Query: 80 PGSCCVCGVPGAPGAEGRNG 21
PGS + G PG PGA GR+G
Sbjct: 235 PGSPGIRGRPGMPGASGRSG 254
>AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen protein
108 protein.
Length = 304
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -1
Query: 89 CLAPGSCCVCGVPGAPGAEGRNGA 18
C PG+ G PG PG G+ GA
Sbjct: 104 CCLPGAAGPAGTPGKPGRPGKAGA 127
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 83 APGSCCVCGVPGAPGAEGRNG 21
APG+C C +PGA G G G
Sbjct: 97 APGNCEACCLPGAAGPAGTPG 117
>Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical
protein C15A11.1 protein.
Length = 303
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 89 CLAPGSCCVCGVPGAPGAEGRNG 21
C A + C G PGAPG +G G
Sbjct: 60 CAAQSTGCPAGPPGAPGEDGAPG 82
>Z77132-3|CAB00860.1| 310|Caenorhabditis elegans Hypothetical
protein F54D1.3 protein.
Length = 310
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 59 GVPGAPGAEGRNGAG 15
G PG PGA+G+ GAG
Sbjct: 217 GAPGQPGADGQRGAG 231
>Z77132-2|CAB00858.1| 294|Caenorhabditis elegans Hypothetical
protein F54D1.2 protein.
Length = 294
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 59 GVPGAPGAEGRNGAG 15
G PG PGA+G+ GAG
Sbjct: 201 GAPGQPGADGQRGAG 215
>Z67738-4|CAJ43444.1| 279|Caenorhabditis elegans Hypothetical
protein W03G11.1b protein.
Length = 279
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 5/26 (19%)
Frame = -1
Query: 83 APGSCCVCGV-----PGAPGAEGRNG 21
A G+CC CGV PG PG +G G
Sbjct: 79 AEGTCCSCGVGSAGPPGPPGFDGSAG 104
>Z67738-3|CAA91544.2| 332|Caenorhabditis elegans Hypothetical
protein W03G11.1a protein.
Length = 332
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 5/26 (19%)
Frame = -1
Query: 83 APGSCCVCGV-----PGAPGAEGRNG 21
A G+CC CGV PG PG +G G
Sbjct: 132 AEGTCCSCGVGSAGPPGPPGFDGSAG 157
>Z49938-3|CAA90188.1| 306|Caenorhabditis elegans Hypothetical
protein F38A3.2 protein.
Length = 306
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 83 APGSCCVCGVPGAPGAEGRNG 21
APG+ G PGAPG G +G
Sbjct: 190 APGNAGAAGAPGAPGPAGPDG 210
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 5/24 (20%)
Frame = -1
Query: 77 GSCCVC-----GVPGAPGAEGRNG 21
GSCC C G PG PG +G +G
Sbjct: 109 GSCCSCKAGASGPPGPPGTDGSDG 132
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 80 PGSCCVCGVPGAPGAEGRNG 21
PG + G+PGAPG G NG
Sbjct: 148 PGQAGLDGLPGAPGQPGSNG 167
>AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen protein
141 protein.
Length = 314
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 83 APGSCCVCGVPGAPGAEGRNGA 18
APG G PG PGA G +GA
Sbjct: 246 APGHPGQAGTPGTPGAPGNSGA 267
>Z83228-2|CAB05733.1| 370|Caenorhabditis elegans Hypothetical
protein F52F12.2 protein.
Length = 370
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = -1
Query: 110 GMVVTRFCLAPGSC--CVCGVPGAPGAEGRNG 21
GM V + + P C CV G PG PG G G
Sbjct: 119 GMDVFKEMIGPVECIPCVAGEPGPPGENGSVG 150
>Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.6 protein.
Length = 290
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +1
Query: 13 GPAPLRPSAPGAPGTPQTQQLPGAKQN 93
GPA P APG PG P PGA N
Sbjct: 229 GPAGA-PGAPGGPGQPGQDGQPGAPGN 254
>U61948-2|AAB03143.2| 345|Caenorhabditis elegans Collagen protein
14 protein.
Length = 345
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Frame = -1
Query: 77 GSCCVC--GVPGAPGAEGRNGA 18
G CC C G PG G GR+GA
Sbjct: 148 GGCCTCHRGPPGPAGDGGRDGA 169
>U55366-4|AAA97982.1| 310|Caenorhabditis elegans Collagen protein
139 protein.
Length = 310
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 71 CCVCGVPGAPGAEGRNG 21
CC+ G PG PG GR G
Sbjct: 109 CCLPGPPGTPGPAGRPG 125
>U50312-8|AAA92324.1| 294|Caenorhabditis elegans Collagen protein
145 protein.
Length = 294
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 80 PGSCCVCGVPGAPGAEGRNGAG 15
PG+ G PG PGA+G+ G+G
Sbjct: 194 PGTPGQDGFPGQPGADGQRGSG 215
>M25480-1|AAA27986.1| 326|Caenorhabditis elegans collagen protein.
Length = 326
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Frame = -1
Query: 77 GSCCVC--GVPGAPGAEGRNGA 18
G CC C G PG G GR+GA
Sbjct: 129 GGCCTCHRGPPGPAGDGGRDGA 150
>AF045645-6|AAC02608.1| 314|Caenorhabditis elegans Collagen protein
101 protein.
Length = 314
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Frame = -1
Query: 77 GSCCVCGV--PGAPGAEGRNGA 18
GSCC CGV G G+ G++GA
Sbjct: 118 GSCCSCGVGSAGPAGSPGQDGA 139
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,433,775
Number of Sequences: 27780
Number of extensions: 308508
Number of successful extensions: 4809
Number of sequences better than 10.0: 90
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4400
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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