Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20422
(773 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 23 2.4
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 23 2.4
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 23 2.4
AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 23 2.4
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 23 2.4
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 23 3.2
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 22 7.3
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 22 7.3
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 22 7.3
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 21 9.6
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 23.4 bits (48), Expect = 2.4
Identities = 14/58 (24%), Positives = 25/58 (43%)
Frame = +3
Query: 45 SSRDSTNAAATWSQTKSCDHHAQTCRNRPRADIERKRKQDCSTNSSSYRNIIKPTRQY 218
SS + + ++ +T SC + R+ R ++ CS + S R K R+Y
Sbjct: 213 SSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRS--REYKKKDRRY 268
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 23.4 bits (48), Expect = 2.4
Identities = 14/58 (24%), Positives = 25/58 (43%)
Frame = +3
Query: 45 SSRDSTNAAATWSQTKSCDHHAQTCRNRPRADIERKRKQDCSTNSSSYRNIIKPTRQY 218
SS + + ++ +T SC + R+ R ++ CS + S R K R+Y
Sbjct: 213 SSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRS--REYKKKDRRY 268
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 23.4 bits (48), Expect = 2.4
Identities = 14/58 (24%), Positives = 25/58 (43%)
Frame = +3
Query: 45 SSRDSTNAAATWSQTKSCDHHAQTCRNRPRADIERKRKQDCSTNSSSYRNIIKPTRQY 218
SS + + ++ +T SC + R+ R ++ CS + S R K R+Y
Sbjct: 213 SSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRS--REYKKKDRRY 268
>AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 23.4 bits (48), Expect = 2.4
Identities = 14/58 (24%), Positives = 25/58 (43%)
Frame = +3
Query: 45 SSRDSTNAAATWSQTKSCDHHAQTCRNRPRADIERKRKQDCSTNSSSYRNIIKPTRQY 218
SS + + ++ +T SC + R+ R ++ CS + S R K R+Y
Sbjct: 213 SSNSLRSRSRSFQRTSSCHSRYEDLRHEDRNSYRNDGERSCSRDRS--REYKKKDRRY 268
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 23.4 bits (48), Expect = 2.4
Identities = 14/58 (24%), Positives = 25/58 (43%)
Frame = +3
Query: 45 SSRDSTNAAATWSQTKSCDHHAQTCRNRPRADIERKRKQDCSTNSSSYRNIIKPTRQY 218
SS + + ++ +T SC + R+ R ++ CS + S R K R+Y
Sbjct: 213 SSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRS--REYKKKDRRY 268
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 23.0 bits (47), Expect = 3.2
Identities = 14/58 (24%), Positives = 25/58 (43%)
Frame = +3
Query: 45 SSRDSTNAAATWSQTKSCDHHAQTCRNRPRADIERKRKQDCSTNSSSYRNIIKPTRQY 218
SS + + ++ +T SC + R+ R ++ CS + S R K R+Y
Sbjct: 213 SSNSLGSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRS--REYKKKDRRY 268
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 21.8 bits (44), Expect = 7.3
Identities = 10/46 (21%), Positives = 20/46 (43%)
Frame = +3
Query: 45 SSRDSTNAAATWSQTKSCDHHAQTCRNRPRADIERKRKQDCSTNSS 182
SS + + ++ +T SC + R+ R ++ CS + S
Sbjct: 213 SSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRS 258
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 21.8 bits (44), Expect = 7.3
Identities = 6/11 (54%), Positives = 7/11 (63%)
Frame = -2
Query: 112 WAWWSHDFVWL 80
+ WWSH WL
Sbjct: 524 YPWWSHVLGWL 534
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 21.8 bits (44), Expect = 7.3
Identities = 6/11 (54%), Positives = 7/11 (63%)
Frame = -2
Query: 112 WAWWSHDFVWL 80
+ WWSH WL
Sbjct: 577 YPWWSHVLGWL 587
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 21.4 bits (43), Expect = 9.6
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 430 RPRGNDDRSTKNSYKQFFSTLRISRNTP*QPS*NSTH 540
RP+ + DR++ Y+ + L S+ +P PS S+H
Sbjct: 413 RPQVSPDRTSPMEYRLYNPALIQSQPSPQYPS-TSSH 448
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,345
Number of Sequences: 438
Number of extensions: 3952
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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