Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20421
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    29   0.36 
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha...    25   5.8  

>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 345 TLMYNVNIIVDVDMKKPTYR*RKTN-RFVYIFVDVIPIYLF*CILDEVLI 491
           T MY +NI +DV ++    R  + N     ++  VIP+  F  IL  +L+
Sbjct: 258 TFMYTLNIRIDVPIRSSRVRGVRQNFPLKLLYTSVIPLIYFYSILSHLLV 307


>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 15/59 (25%), Positives = 24/59 (40%)
 Frame = -2

Query: 536 TFRKNFFRLAPFTTRDKNFVQYTSK*VNRYYVNKDVNKSVSFTLSVRGFLHINVDDNIY 360
           T R    R  P T+            ++R  VNK  N S ++   +   L +  DDN++
Sbjct: 80  TSRNGLDRFIPMTSNKDTISLGRHSSLSRNLVNKTKNASETYQQLLEYALEVERDDNVF 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,034,253
Number of Sequences: 5004
Number of extensions: 37594
Number of successful extensions: 60
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)