Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20421
         (564 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78015-3|CAB01435.1|  448|Caenorhabditis elegans Hypothetical pr...    24   8.0  
AF098504-5|AAC67410.3|  322|Caenorhabditis elegans Serpentine re...    27   9.3  

>Z78015-3|CAB01435.1|  448|Caenorhabditis elegans Hypothetical
           protein R02D5.6 protein.
          Length = 448

 Score = 23.8 bits (49), Expect(2) = 8.0
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 327 RLLSAITLMYNVNIIVDVDMKKPTYR*RKTNRFVYIFVDVIPIYLF*C 470
           +L S  TL  +   I+ V ++   Y+   T  F Y FV ++P++   C
Sbjct: 119 QLPSICTLFLSFERILAV-VRPAVYKRMCTQNFKYCFVAMVPVWAVVC 165



 Score = 21.8 bits (44), Expect(2) = 8.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 243 ILYIVLDCKNLRRSIFFRL 299
           ILY+VLDC  L  +I + L
Sbjct: 63  ILYLVLDCCELLDAISYVL 81


>AF098504-5|AAC67410.3|  322|Caenorhabditis elegans Serpentine
           receptor, class t protein62 protein.
          Length = 322

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +3

Query: 216 MSCATTS*LILYIVLDCKNLRRSIFFRLCFFL 311
           MSCA    LIL I+   K L R   +R  FFL
Sbjct: 31  MSCAIAYYLILSIIYKDKELFRMASYRFMFFL 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,002,356
Number of Sequences: 27780
Number of extensions: 204020
Number of successful extensions: 417
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)