Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20421
         (564 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23170.1 68418.m02710 protein kinase family protein contains ...    27   6.5  
At1g61360.1 68414.m06915 S-locus lectin protein kinase family pr...    27   8.7  

>At5g23170.1 68418.m02710 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 341

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 475 WTKFLSRVVKGARRKKFLRKVVT 543
           W   L RVVK  RRKK LR+ +T
Sbjct: 310 WMSVLRRVVKLKRRKKRLRETLT 332


>At1g61360.1 68414.m06915 S-locus lectin protein kinase family
           protein contains protein kinase domain, Pfam:PF00069;
           contains S-locus glycoprotein family domain,
           Pfam:PF00954
          Length = 821

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 128 DPSSGEVVCASLDIGNLIAA*NNETENYLIQN 33
           DP+S +     LD GNL+   +N T NYL Q+
Sbjct: 109 DPTSNKCRAELLDTGNLVVV-DNVTGNYLWQS 139


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,910,781
Number of Sequences: 28952
Number of extensions: 172226
Number of successful extensions: 287
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)