Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20420
         (807 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    27   2.4  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   5.5  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    26   7.2  
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    25   9.6  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    25   9.6  
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    25   9.6  

>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -3

Query: 445 YLSI*ELMNQSSQISWFGSVSGKYSFCNIILGVVIEATVFGGFSIGN 305
           +L    ++N       F S+S KYSFCN+    +I +      SIGN
Sbjct: 131 FLDFYGILNFKGHSEPFYSISEKYSFCNLKTSALILSKA-ASASIGN 176


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 612  LNNIQIDNSKYKKTCALLHLLIYKYFFEIKLLIVLKSVDY 493
            + ++ + NSK+    AL   +IYK    ++   VLKS DY
Sbjct: 1794 VTSLMLVNSKHPSMSALCRFIIYKSVTMLQNGEVLKSGDY 1833


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
 Frame = +3

Query: 204 DKPNNDCVPLQRNTQVYQED---MKFHVL--NCPSKTSIFPIEKPPKTVA 338
           D  NN    + RN   Y E    ++F  +  NCP  T +FP+   PK +A
Sbjct: 312 DHCNNWIAIVTRNFMAYIETKRKLEFDSIPFNCPLITQLFPLISSPKEMA 361


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 162 TKITAAAPYCQM*MDKPNNDCVPLQRNTQVYQEDMKFHVLNCPSK 296
           TKI   A  C    ++P  +CV +  +TQ Y E   F    CP +
Sbjct: 722 TKINNTAFICSWLTNQPA-ECVNILTSTQRYPEANLFAATYCPDE 765


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
 Frame = -2

Query: 542 NTFLKLNC*-LYSNLWITIYSAVCLXXXXXXXXXXXXIRTNESVI-PNFMVWVSFW*IFF 369
           N F+  N   +YS+LWI + S                  T + +  P   +WV+ W +  
Sbjct: 401 NLFMDKNALNVYSDLWILLGSLHLSITKIKSLFYERKEYTAKGISQPWTQLWVTLWFLSS 460

Query: 368 LQYY 357
           LQYY
Sbjct: 461 LQYY 464


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 612 LNNIQIDNSKYKKTCALLHLLIYKYFFEIKLLIVLKSVDY 493
           ++N  + N KY+K+CAL  L +        + I + +V+Y
Sbjct: 16  ISNFILYNRKYRKSCALAFLTLRYTLLCYSIPIHIHTVNY 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,313,498
Number of Sequences: 5004
Number of extensions: 71501
Number of successful extensions: 170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)