Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20420
         (807 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0699 + 22245933-22246213,22246493-22246575,22246844-222471...    30   2.5  
11_05_0061 + 18746520-18747218                                         28   7.6  
11_05_0054 - 18691386-18692084                                         28   7.6  

>12_02_0699 +
           22245933-22246213,22246493-22246575,22246844-22247125,
           22248725-22248986,22250146-22251781,22251910-22252416
          Length = 1016

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +3

Query: 573 FFYIYCCLSEYYLKNLVMV--FILELFFYITLIIN*NVKFCYGAVI 704
           +FY       YYL NLV+V  ++L LF + T+I    V + +G +I
Sbjct: 339 WFYGRSRSRSYYLNNLVVVVIWLLHLFVFATIICPLAVLYMFGLII 384


>11_05_0061 + 18746520-18747218
          Length = 232

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 282 SIRETSCLPGIPVCCVVRAR 223
           S RET C+ G+P  C++RAR
Sbjct: 58  SARETWCVIGMPELCILRAR 77


>11_05_0054 - 18691386-18692084
          Length = 232

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 282 SIRETSCLPGIPVCCVVRAR 223
           S RET C+ G+P  C++RAR
Sbjct: 58  SARETWCVIGMPELCILRAR 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,304,212
Number of Sequences: 37544
Number of extensions: 381534
Number of successful extensions: 762
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)