Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20420
         (807 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12330| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06
SB_26064| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_51280| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_10106| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_51517| Best HMM Match : RVT_1 (HMM E-Value=0.0053)                  28   7.7  

>SB_12330| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 466

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
 Frame = +1

Query: 91  IRTDLRSEMDDPFVSCPYNPIHRVPRSRLQRHIVKCEWINPTM--IACPYNATHRYTRKT 264
           I T +  + D+ FV CPY+P+HR+   R   H++KC   N +M  + CP+NA H   ++ 
Sbjct: 5   IPTFVNVDPDEMFV-CPYDPVHRISAKRFTYHLMKCRRNNSSMEFVRCPFNARHEMPKEE 63

Query: 265 *SF 273
             F
Sbjct: 64  LDF 66



 Score = 33.1 bits (72), Expect = 0.27
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 106 RSEMDDPFVSCPYNPIHRVPRSRLQRHIVKC 198
           R+     FV CP+N  H +P+  L  H+ +C
Sbjct: 41  RNNSSMEFVRCPFNARHEMPKEELDFHVARC 71


>SB_26064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 309 PIEKPPKTVASITTPKIILQKEYLPETDPNHEIWDD 416
           P ++PP T+A IT P   + ++  P T+P   + +D
Sbjct: 233 PKDRPPTTIAPITEPVEPVTEDLKPVTEPVEPVTED 268


>SB_51280| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 169

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 427 LMNQSSQISWFGSVSGKYSFCNIILGVVIEATVF 326
           L N+SS ++ FG+  G++ F  +  G+V+   +F
Sbjct: 11  LDNESSYLTTFGTPFGRFKFSRLPFGLVVSQDIF 44


>SB_10106| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 261 LPGIPVCCVVRARNHCWVYPFTFDN 187
           LPG+PV  V   +N    YPF+F+N
Sbjct: 13  LPGLPVVKVCVDKNRVPTYPFSFEN 37


>SB_51517| Best HMM Match : RVT_1 (HMM E-Value=0.0053)
          Length = 346

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -3

Query: 481 QYVYIVRSNSFPYLSI*ELMNQSSQISWFGSVSGKYSFCNIILGVVIEATVF 326
           Q+  IV + S  Y +I +L  +SS  + F S  G+Y FC +  G++    VF
Sbjct: 34  QFFSIVDARS-GYWNI-KLDLESSLCTTFNSTHGRYRFCRLPFGLICAQDVF 83


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,418,026
Number of Sequences: 59808
Number of extensions: 482934
Number of successful extensions: 1065
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)