Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20420
         (807 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457744-2|CAM36368.1|  169|Caenorhabditis elegans Hypothetical ...    29   3.9  
Z75538-2|CAA99840.1|  476|Caenorhabditis elegans Hypothetical pr...    29   5.2  
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr...    29   5.2  
U53139-4|AAK18931.2|  369|Caenorhabditis elegans Serpentine rece...    28   9.0  
AF016447-9|AAG24009.1|  233|Caenorhabditis elegans Hypothetical ...    28   9.0  

>CU457744-2|CAM36368.1|  169|Caenorhabditis elegans Hypothetical
           protein T06A10.3 protein.
          Length = 169

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 109 SEMDDPFVSCPYNPIHRVPRSRLQRHIVKC 198
           S+ D   ++CPYN  H+V       H+ KC
Sbjct: 12  SKNDRFSITCPYNSDHKVSMEEFNTHLWKC 41


>Z75538-2|CAA99840.1|  476|Caenorhabditis elegans Hypothetical
           protein F20G4.2 protein.
          Length = 476

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 249 VYQEDMKFHVLNCPSKTSIFPIEKPPKTVAS 341
           +Y+E   F V NC  + S F IE  P+ + S
Sbjct: 253 IYEESEAFEVANCNLEASPFKIEVSPEKIGS 283


>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical
           protein F42C5.10 protein.
          Length = 1292

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +3

Query: 273 HVLNCPSKTSIFPIEKPPKTVASITTPKIILQKEYLPETDPNHEIWDD*FISS 431
           H++  P    I P   PP  +  + TP  ++++E  P   P    +DD +I +
Sbjct: 582 HIVFVPLLPYIPPPPPPPAEIIHVATPAEVIEEEPEPVPVPAKRHYDDLYIGN 634


>U53139-4|AAK18931.2|  369|Caenorhabditis elegans Serpentine
           receptor, class w protein67 protein.
          Length = 369

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -3

Query: 397 FGSVSGKYSFCNIILGVVIEATVFGGFSIGNIEVLEGQFNT*NFMSSWYTCV 242
           F S  G    C ++ G V+E + + G +  ++ V+ G F T N +S    C+
Sbjct: 288 FMSAEGPMGICTVVQGFVVEKSGYLGITF-DLVVIFGLFVTINAISHCLICL 338


>AF016447-9|AAG24009.1|  233|Caenorhabditis elegans Hypothetical
           protein C54F6.4 protein.
          Length = 233

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +3

Query: 546 ISISAEGHMFFYIYCCLSEYYLKNLVMVFILELFFYITLIIN*NVKFCYGAVIFCFNI 719
           I I+    MFF  +    +YY+  L +V I+ L   + +  N NV+F  G V    N+
Sbjct: 65  IPIAVFNAMFFLYFSKPKKYYMTQLSIVTIIILTMLMLIHFNPNVQF-LGFVCIVLNL 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,042,867
Number of Sequences: 27780
Number of extensions: 391272
Number of successful extensions: 843
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)