Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20420
         (807 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.83 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    24   1.4  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   4.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   5.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   5.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   5.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   5.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   7.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   7.7  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 576 FYIYCCLSEYYLKNLVMVFI 635
           F IY  LS +Y+  ++MVF+
Sbjct: 343 FIIYSSLSSFYIPCIIMVFL 362


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/52 (19%), Positives = 27/52 (51%)
 Frame = +3

Query: 252 YQEDMKFHVLNCPSKTSIFPIEKPPKTVASITTPKIILQKEYLPETDPNHEI 407
           +QE+ +   +  P + +  P+   P+   S ++PK + ++E    + P+ ++
Sbjct: 329 FQEERRSEPVEPPRRKNNCPLHCKPELGQSQSSPKFVARREESNSSSPSLDL 380


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 523 IVNCTQICGLQYTQQYVYIVRSNSFPYLS 437
           IV CT        +QYV +  S +  Y+S
Sbjct: 431 IVKCTDFVDKAMVKQYVKVKHSATLGYIS 459


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +3

Query: 210 PNNDCVPLQRNTQVYQEDMKFHVLNCPSKTSIFPIEKP 323
           P +  + + RN  V     +  +L+C  + +IFP + P
Sbjct: 161 PVHFALRIYRNGTVNYLMRRHLILSCQGRLNIFPFDDP 198


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +3

Query: 210 PNNDCVPLQRNTQVYQEDMKFHVLNCPSKTSIFPIEKP 323
           P +  + + RN  V     +  +L+C  + +IFP + P
Sbjct: 161 PVHFALRIYRNGTVNYLMRRHLILSCQGRLNIFPFDDP 198


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +3

Query: 210 PNNDCVPLQRNTQVYQEDMKFHVLNCPSKTSIFPIEKP 323
           P +  + + RN  V     +  +L+C  + +IFP + P
Sbjct: 212 PVHFALRIYRNGTVNYLMRRHLILSCQGRLNIFPFDDP 249


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +3

Query: 210 PNNDCVPLQRNTQVYQEDMKFHVLNCPSKTSIFPIEKP 323
           P +  + + RN  V     +  +L+C  + +IFP + P
Sbjct: 161 PVHFALRIYRNGTVNYLMRRHLILSCQGRLNIFPFDDP 198


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +3

Query: 567 HMFFYIYCCLSEYYLKNLVMVFILELFF 650
           + F+ IY  L  +Y+   VM+ +    F
Sbjct: 199 NFFYQIYATLGSFYIPLFVMIQVYYKIF 226


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 576 FYIYCCLSEYYLKNLVMVF 632
           + +Y  L  +Y+  LVM+F
Sbjct: 247 YVVYSALGSFYIPMLVMLF 265


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,942
Number of Sequences: 438
Number of extensions: 5396
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)